A systematic review of natural language processing for classification tasks in the field of incident reporting and adverse event analysis

被引:66
作者
Young, Ian James Bruce [1 ]
Luz, Saturnino [2 ]
Lone, Nazir [3 ]
机构
[1] Edinburgh Royal Infirm, Dept Anaesthesia Crit Care & Pain Med, 51 Little France Crescent, Edinburgh EH16 4SA, SA, Scotland
[2] Univ Edinburgh, Usher Inst Populat Hlth Sci & Informat, 9 Little France Rd, Edinburgh EH16 4UX, Midlothian, Scotland
[3] Univ Edinburgh, Usher Inst Populat Hlth Sci & Informat, Teviot Pl, Edinburgh EH8 9AG, Midlothian, Scotland
关键词
Natural language processing; Machine learning; Text classification; Incident reporting; Adverse event analysis; Patient safety; ELECTRONIC HEALTH RECORDS; AUTOMATED IDENTIFICATION; LINGUISTIC ANALYSIS; INFORMATION; EXTRACTION; SEVERITY; MULTIPLE; TOOL;
D O I
10.1016/j.ijmedinf.2019.103971
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Context: Adverse events in healthcare are often collated in incident reports which contain unstructured free text. Learning from these events may improve patient safety. Natural language processing (NLP) uses computational techniques to interrogate free text, reducing the human workload associated with its analysis. There is growing interest in applying NLP to patient safety, but the evidence in the field has not been summarised and evaluated to date. Objective: To perform a systematic literature review and narrative synthesis to describe and evaluate NLP methods for classification of incident reports and adverse events in healthcare. Methods: Data sources included Medline, Embase, The Cochrane Library, CINAHL, MIDIRS, ISI Web of Science, SciELO, Google Scholar, PROSPERO, hand searching of key articles, and OpenGrey. Data items were manually abstracted to a standardised extraction form. Results: From 428 articles screened for eligibility, 35 met the inclusion criteria of using NLP to perform a classification task on incident reports, or with the aim of detecting adverse events. The majority of studies used free text from incident reporting systems or electronic health records. Models were typically designed to classify by type of incident, type of medication error, or harm severity. A broad range of NLP techniques are demonstrated to perform these classification tasks with favourable performance outcomes. There are methodological challenges in how these results can be interpreted in a broader context. Conclusion: NLP can generate meaningful information from unstructured data in the specific domain of the classification of incident reports and adverse events. Understanding what or why incidents are occurring is important in adverse event analysis. If NLP enables these insights to be drawn from larger datasets it may improve the learning from adverse events in healthcare.
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页数:7
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共 65 条
[1]   Data science, learning, and applications to biomedical and health sciences [J].
Adam, Nabil R. ;
Wieder, Robert ;
Ghosh, Debopriya .
ANNALS OF THE NEW YORK ACADEMY OF SCIENCES, 2017, 1387 (01) :5-11
[2]  
[Anonymous], 2000, ERR IS HUMAN
[3]  
Benin Andrea L, 2016, J Healthc Risk Manag, V36, P10, DOI 10.1002/jhrm.21237
[4]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[5]   Vaccine adverse event text mining system for extracting features from vaccine safety reports [J].
Botsis, Taxiarchis ;
Buttolph, Thomas ;
Nguyen, Michael D. ;
Winiecki, Scott ;
Woo, Emily Jane ;
Ball, Robert .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2012, 19 (06) :1011-1018
[6]   Text mining for the Vaccine Adverse Event Reporting System: medical text classification using informative feature selection [J].
Botsis, Taxiarchis ;
Nguyen, Michael D. ;
Woo, Emily Jane ;
Markatou, Marianthi ;
Ball, Robert .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2011, 18 (05) :631-638
[7]  
Boyce RD, 2017, APPL CLIN INFORM, V8, P1022, DOI [10.4338/ACI-2017-02-RA0036, 10.4338/ACI-2017-02-RA-0036]
[8]  
Cai T., 2016, ARTHRITIS RHEUMATOL, V68, P2802
[9]  
Carrell D.S., 2019, PRACTICE EPIDEMIOLOG
[10]   Challenges in adapting existing clinical natural language processing systems to multiple, diverse health care settings [J].
Carrell, David S. ;
Schoen, Robert E. ;
Leffler, Daniel A. ;
Morris, Michele ;
Rose, Sherri ;
Baer, Andrew ;
Crockett, Seth D. ;
Gourevitch, Rebecca A. ;
Dean, Katie M. ;
Mehrotra, Ateev .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2017, 24 (05) :986-991