Bayesian analysis of isothermal titration calorimetry for binding thermodynamics

被引:20
|
作者
Trung Hai Nguyen [1 ]
Rustenburg, Arien S. [2 ,3 ]
Krimmer, Stefan G. [4 ]
Zhang, Hexi [1 ]
Clark, John D. [1 ]
Novick, Paul A. [5 ,6 ]
Branson, Kim [5 ,7 ]
Pande, Vijay S. [5 ]
Chodera, John D. [2 ]
Minh, David D. L. [1 ]
机构
[1] IIT, Dept Chem, Chicago, IL 60616 USA
[2] Mem Sloan Kettering Canc Ctr, Sloan Kettering Inst, Computat & Syst Biol Program, 1275 York Ave, New York, NY 10021 USA
[3] Weill Cornell Med Coll, Grad Program Physiol Biophys & Syst Biol, New York, NY USA
[4] Univ Marburg, Dept Pharmaceut Chem, Marbacher Weg 6, Marburg, Germany
[5] Stanford Univ, Dept Chem, Stanford, CA 94305 USA
[6] Nurix, San Francisco, CA USA
[7] Genentech Inc, San Francisco, CA USA
来源
PLOS ONE | 2018年 / 13卷 / 09期
基金
美国国家卫生研究院;
关键词
INHIBITOR BINDING; STATISTICAL ERROR; RAPID MEASUREMENT; LIGAND-BINDING; ASSOCIATION; PROTONATION; ENERGETICS; LANDSCAPE; CONSTANTS;
D O I
10.1371/journal.pone.0203224
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Isothermal titration calorimetry (ITC) is the only technique able to determine both the enthalpy and entropy of noncovalent association in a single experiment. The standard data analysis method based on nonlinear regression, however, provides unrealistically small uncertainty estimates due to its neglect of dominant sources of error. Here, we present a Bayesian framework for sampling from the posterior distribution of all thermodynamic parameters and other quantities of interest from one or more ITC experiments, allowing uncertainties and correlations to be quantitatively assessed. For a series of ITC measurements on metal: chelator and protein: ligand systems, the Bayesian approach yields uncertainties which represent the variability from experiment to experiment more accurately than the standard data analysis. In some datasets, the median enthalpy of binding is shifted by as much as 1.5 kcal/mol. A Python implementation suitable for analysis of data generated by MicroCal instruments (and adaptable to other calorimeters) is freely available online.
引用
收藏
页数:26
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