A comparative study of the low-frequency vibrations of L-histidine molecule in different solid states

被引:6
作者
Xu, Li [1 ]
Li, Yin [2 ]
Zhou, Qi [2 ]
Deng, Xiaohua [2 ,3 ]
机构
[1] East China Univ Technol, Dept Chem Engn & Technol, Sch Chem Biol & Mat Sci, Guanglan Ave 418, Nanchang 330013, Jiangxi, Peoples R China
[2] Nanchang Univ, Sch Sci, Dept Phys, Xuefu Ave 999, Nanchang 330031, Jiangxi, Peoples R China
[3] Nanchang Univ, Inst Space Sci & Technol, Xuefu Ave 999, Nanchang 330031, Jiangxi, Peoples R China
关键词
Terahertz spectroscopy; DFT calculation; Low-frequency vibrations; L-Histidine; L-Histidine monohydrochloride monohydrate; TERAHERTZ ABSORPTION-SPECTROSCOPY; HYDROGEN-BONDING NETWORK; NEUTRON-DIFFRACTION; ACID; DYNAMICS; MODES; SPECTRA; MOTIONS; WATER;
D O I
10.1016/j.saa.2019.117468
中图分类号
O433 [光谱学];
学科分类号
0703 ; 070302 ;
摘要
Low-frequency vibrations of L-histidine in a neat solid state and its monohydrochloride monohydrate are both investigated using THz spectroscopy and DFT calculations. The molecular motions in those modes are further quantitatively decomposed into a number of submotions and discussed in terms of their contributions to a mode. The results show significant differences in the averaged contribution percentage of intermolecular motions and the dihedral angle distortions of the imidazole ring between these two crystals. Those phenomena are interpreted from the viewpoint of their hydrogen-bond configurations. (C) 2019 Elsevier B.V. All rights reserved.
引用
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页数:6
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共 28 条
[1]   Coarse-grained normal mode analysis in structural biology [J].
Bahar, I ;
Rader, AJ .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2005, 15 (05) :586-592
[2]   Calculation and Measurement of Terahertz Active Normal Modes in Crystalline PETN [J].
Burnett, Andrew D. ;
Kendrick, John ;
Cunningham, John E. ;
Hargreaves, Michael D. ;
Munshi, Tasmin ;
Edwards, Howell G. M. ;
Linfield, Edmund H. ;
Davies, A. Giles .
CHEMPHYSCHEM, 2010, 11 (02) :368-378
[3]   An extended dynamical hydration shell around proteins [J].
Ebbinghaus, Simon ;
Kim, Seung Joong ;
Heyden, Matthias ;
Yu, Xin ;
Heugen, Udo ;
Gruebele, Martin ;
Leitner, David M. ;
Havenith, Martina .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (52) :20749-20752
[4]   First-principles infrared spectrum of nitric acid and nitric acid monohydrate crystals [J].
Fernández-Torre, D ;
Escribano, R ;
Archer, T ;
Pruneda, JM ;
Artacho, E .
JOURNAL OF PHYSICAL CHEMISTRY A, 2004, 108 (47) :10535-10541
[5]   NEUTRON-DIFFRACTION STUDY OF L-HISTIDINE HYDROCHLORIDE MONOHYDRATE [J].
FUESS, H ;
HOHLWEIN, D ;
MASON, SA .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1977, 33 (MAR15) :654-659
[6]   QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials [J].
Giannozzi, Paolo ;
Baroni, Stefano ;
Bonini, Nicola ;
Calandra, Matteo ;
Car, Roberto ;
Cavazzoni, Carlo ;
Ceresoli, Davide ;
Chiarotti, Guido L. ;
Cococcioni, Matteo ;
Dabo, Ismaila ;
Dal Corso, Andrea ;
de Gironcoli, Stefano ;
Fabris, Stefano ;
Fratesi, Guido ;
Gebauer, Ralph ;
Gerstmann, Uwe ;
Gougoussis, Christos ;
Kokalj, Anton ;
Lazzeri, Michele ;
Martin-Samos, Layla ;
Marzari, Nicola ;
Mauri, Francesco ;
Mazzarello, Riccardo ;
Paolini, Stefano ;
Pasquarello, Alfredo ;
Paulatto, Lorenzo ;
Sbraccia, Carlo ;
Scandolo, Sandro ;
Sclauzero, Gabriele ;
Seitsonen, Ari P. ;
Smogunov, Alexander ;
Umari, Paolo ;
Wentzcovitch, Renata M. .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2009, 21 (39)
[7]   Semiempirical GGA-type density functional constructed with a long-range dispersion correction [J].
Grimme, Stefan .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2006, 27 (15) :1787-1799
[8]   Far-infrared spectroscopy of proteinogenic and other less common amino acids [J].
Iglesias-Groth, S. ;
Cataldo, F. .
MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, 2018, 478 (03) :3430-3437
[9]   Precise ab-initio prediction of terahertz vibrational modes in crystalline systems [J].
Jepsen, Peter Uhd ;
Clark, Stewart J. .
CHEMICAL PHYSICS LETTERS, 2007, 442 (4-6) :275-280
[10]   Noncovalent Interactions between Modified Cytosine and Guanine DNA Base Pair Mimics Investigated by Terahertz Spectroscopy and Solid-State Density Functional Theory [J].
King, Matthew D. ;
Korter, Timothy M. .
JOURNAL OF PHYSICAL CHEMISTRY A, 2011, 115 (50) :14391-14396