Frontier methods in coherent X-ray diffraction for high-resolution structure determination

被引:12
作者
Gallagher-Jones, Marcus [1 ,2 ]
Rodriguez, Jose A. [3 ]
Miao, Jianwei [1 ,2 ]
机构
[1] Univ Calif Los Angeles, Dept Phys & Astron, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Calif NanoSyst Inst, Los Angeles, CA 90095 USA
[3] Univ Calif Los Angeles, UCLA DOE Inst Genom & Prote, Dept Chem & Biochem, Los Angeles, CA 90095 USA
基金
美国国家科学基金会;
关键词
FREE-ELECTRON LASER; SERIAL FEMTOSECOND CRYSTALLOGRAPHY; SMALL-ANGLE SCATTERING; PROTEIN-STRUCTURE DETERMINATION; MACROMOLECULAR STRUCTURES; CRYSTAL-STRUCTURE; PHASE RETRIEVAL; FLUORESCENCE MICROSCOPY; BACTERIAL-CELLS; PHOTOSYSTEM-II;
D O I
10.1017/S0033583516000147
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
In 1912, Max von Laue and collaborators first observed diffraction spots from a millimeter-sized crystal of copper sulfate using an Xray tube. Crystallography was born of this experiment, and since then, diffraction by both X-rays and electrons has revealed a myriad of inorganic and organic structures, including structures of complex protein assemblies. Advancements in X-ray sources have spurred a revolution in structure determination, facilitated by the development of new methods. This review explores some of the frontier methods that are shaping the future of X-ray diffraction, including coherent diffractive imaging, serial femtosecond X-ray crystallography and small-angle X-ray scattering. Collectively, these methods expand the current limits of structure determination in biological systems across multiple length and time scales.
引用
收藏
页数:24
相关论文
共 203 条
[1]   Operation of a free-electron laser from the extreme ultraviolet to the water window [J].
Ackermann, W. ;
Asova, G. ;
Ayvazyan, V. ;
Azima, A. ;
Baboi, N. ;
Baehr, J. ;
Balandin, V. ;
Beutner, B. ;
Brandt, A. ;
Bolzmann, A. ;
Brinkmann, R. ;
Brovko, O. I. ;
Castellano, M. ;
Castro, P. ;
Catani, L. ;
Chiadroni, E. ;
Choroba, S. ;
Cianchi, A. ;
Costello, J. T. ;
Cubaynes, D. ;
Dardis, J. ;
Decking, W. ;
Delsim-Hashemi, H. ;
Delserieys, A. ;
Di Pirro, G. ;
Dohlus, M. ;
Duesterer, S. ;
Eckhardt, A. ;
Edwards, H. T. ;
Faatz, B. ;
Feldhaus, J. ;
Floettmann, K. ;
Frisch, J. ;
Froehlich, L. ;
Garvey, T. ;
Gensch, U. ;
Gerth, Ch. ;
Goerler, M. ;
Golubeva, N. ;
Grabosch, H.-J. ;
Grecki, M. ;
Grimm, O. ;
Hacker, K. ;
Hahn, U. ;
Han, J. H. ;
Honkavaara, K. ;
Hott, T. ;
Huening, M. ;
Ivanisenko, Y. ;
Jaeschke, E. .
NATURE PHOTONICS, 2007, 1 (06) :336-342
[2]  
Allaria E, 2012, NAT PHOTONICS, V6, P699, DOI [10.1038/nphoton.2012.233, 10.1038/NPHOTON.2012.233]
[3]  
Amann J, 2012, NAT PHOTONICS, V6, P693, DOI [10.1038/nphoton.2012.180, 10.1038/NPHOTON.2012.180]
[4]   The linac coherent light source single particle imaging road map [J].
Aquila, A. ;
Barty, A. ;
Bostedt, C. ;
Boutet, S. ;
Carini, G. ;
dePonte, D. ;
Drell, P. ;
Doniach, S. ;
Downing, K. H. ;
Earnest, T. ;
Elmlund, H. ;
Elser, V. ;
Guehr, M. ;
Hajdu, J. ;
Hastings, J. ;
Hau-Riege, S. P. ;
Huang, Z. ;
Lattman, E. E. ;
Maia, F. R. N. C. ;
Marchesini, S. ;
Ourmazd, A. ;
Pellegrini, C. ;
Santra, R. ;
Schlichting, I. ;
Schroer, C. ;
Spence, J. C. H. ;
Vartanyants, I. A. ;
Wakatsuki, S. ;
Weis, W. I. ;
Williams, G. J. .
STRUCTURAL DYNAMICS-US, 2015, 2 (04)
[5]  
Arnlund D, 2014, NAT METHODS, V11, P923, DOI [10.1038/NMETH.3067, 10.1038/nmeth.3067]
[6]   Macromolecular diffractive imaging using imperfect crystals [J].
Ayyer, Kartik ;
Yefanov, Oleksandr M. ;
Oberthuer, Dominik ;
Roy-Chowdhury, Shatabdi ;
Galli, Lorenzo ;
Mariani, Valerio ;
Basu, Shibom ;
Coe, Jesse ;
Conrad, Chelsie E. ;
Fromme, Raimund ;
Schaffer, Alexander ;
Droener, Katerina ;
James, Daniel ;
Kupitz, Christopher ;
Metz, Markus ;
Nelson, Garrett ;
Xavier, Paulraj Lourdu ;
Beyerlein, Kenneth R. ;
Schmidt, Marius ;
Sarrou, Iosifina ;
Spence, John C. H. ;
Weierstall, Uwe ;
White, Thomas A. ;
Yang, Jay-How ;
Zhao, Yun ;
Liang, Mengning ;
Aquila, Andrew ;
Hunter, Mark S. ;
Robinson, Joseph S. ;
Koglin, Jason E. ;
Boutet, Sebastien ;
Fromme, Petra ;
Barty, Anton ;
Chapman, Henry N. .
NATURE, 2016, 530 (7589) :202-+
[7]   How cryo-EM is revolutionizing structural biology [J].
Bai, Xiao-Chen ;
McMullan, Greg ;
Scheres, Sjors H. W. .
TRENDS IN BIOCHEMICAL SCIENCES, 2015, 40 (01) :49-57
[8]   De novo protein crystal structure determination from X-ray free-electron laser data [J].
Barends, Thomas R. M. ;
Foucar, Lutz ;
Botha, Sabine ;
Doak, R. Bruce ;
Shoeman, Robert L. ;
Nass, Karol ;
Koglin, Jason E. ;
Williams, Garth J. ;
Boutet, Sebastien ;
Messerschmidt, Marc ;
Schlichting, Ilme .
NATURE, 2014, 505 (7482) :244-+
[9]   Anomalous signal from S atoms in protein crystallographic data from an X-ray free-electron laser [J].
Barends, Thomas R. M. ;
Foucar, Lutz ;
Shoeman, Robert L. ;
Bari, Sadia ;
Epp, Sascha W. ;
Hartmann, Robert ;
Hauser, Gunter ;
Huth, Martin ;
Kieser, Christian ;
Lomb, Lukas ;
Motomura, Koji ;
Nagaya, Kiyonobu ;
Schmidt, Carlo ;
Strecker, Rafael ;
Anielski, Denis ;
Boll, Rebecca ;
Erk, Benjamin ;
Fukuzawa, Hironobu ;
Hartmann, Elisabeth ;
Hatsui, Takaki ;
Holl, Peter ;
Inubushi, Yuichi ;
Ishikawa, Tetsuya ;
Kassemeyer, Stephan ;
Kaiser, Christian ;
Koeck, Frank ;
Kunishima, Naoki ;
Kurka, Moritz ;
Rolles, Daniel ;
Rudek, Benedikt ;
Rudenko, Artem ;
Sato, Takahiro ;
Schroeter, Claus-Dieter ;
Soltau, Heike ;
Strueder, Lothar ;
Tanaka, Tomoyuki ;
Togashi, Tadashi ;
Tono, Kensuke ;
Ullrich, Joachim ;
Yase, Satoshi ;
Wada, Shin-ichi ;
Yao, Makoto ;
Yabashi, Makina ;
Ueda, Kiyoshi ;
Schlichting, Ilme .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2013, 69 :838-842
[10]   Cluster imaging with a direct detection CMOS pixel sensor in Transmission Electron Microscopy [J].
Battaglia, Marco ;
Contarato, Devis ;
Denes, Peter ;
Giubilato, Piero .
NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 2009, 608 (02) :363-365