Molecular Titration Promotes Oscillations and Bistability in Minimal Network Models with Monomeric Regulators

被引:31
作者
Samaniego, Christian Cuba [1 ]
Giordano, Giulia [2 ]
Kim, Jongmin [3 ]
Blanchini, Franco [2 ]
Franco, Elisa [1 ]
机构
[1] Univ Calif Riverside, Mech Engn, Riverside, CA 92521 USA
[2] Univ Udine, Math & Comp Sci, I-33100 Udine, Italy
[3] Harvard Univ, Wyss Inst Biol Inspired Engn, 3 Blackfan Circle, Boston, MA 02115 USA
基金
美国国家科学基金会;
关键词
titration; oscillations; bistability; monomeric regulator; delays; synthetic biology; RNA; TOGGLE SWITCH; MESSENGER-RNA; CONSTRUCTION; DEGRADATION; ELONGATION; FEEDBACK; BEHAVIOR; CIRCUIT; CRISPR;
D O I
10.1021/acssynbio.5b00176
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Molecular titration is emerging as an important biochemical interaction mechanism within synthetic devices built with nucleic acids and the CRISPR/Cas system. We show that molecular titration in the context of feedback circuits is a suitable mechanism to enhance the emergence of oscillations and bistable behaviors. We consider biomolecular modules that can be inhibited or activated by input monomeric regulators; the regulators compete with constitutive titrating species to determine the activity of their target. By tuning the titration rate and the concentration of titrating species, it is possible to modulate the delay and convergence speed of the transient response, and the steepness and dead zone of the stationary response of the modules. These phenomena favor the occurrence of oscillations when modules are interconnected to create a negative feedback loop; bistability is favored in a positive feedback interconnection. Numerical simulations are supported by mathematical analysis showing that the capacity of the closed loop systems to exhibit oscillations or bistability is structural.
引用
收藏
页码:321 / 333
页数:13
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