Coupling field theory with mesoscopic dynamical simulations of multicomponent lipid bilayers

被引:47
|
作者
McWhirter, JL
Ayton, G
Voth, GA
机构
[1] Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
[2] Univ Utah, Henry Eyring Ctr Theoret Chem, Salt Lake City, UT 84112 USA
基金
加拿大自然科学与工程研究理事会; 美国国家卫生研究院;
关键词
D O I
10.1529/biophysj.104.045716
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
A method for simulating a two-component lipid bilayer membrane in the mesoscopic regime is presented. The membrane is modeled as an elastic network of bonded points; the spring constants of these bonds are parameterized by the microscopic bulk modulus estimated from earlier atomistic nonequilibrium molecular dynamics simulations for several bilayer mixtures of DMPC and cholesterol. The modulus depends on the composition of a point in the elastic membrane model. The dynamics of the composition field is governed by the Cahn-Hilliard equation where a free energy functional models the coupling between the composition and curvature fields. The strength of the bonds in the elastic network are then modulated noting local changes in the composition and using a fit to the nonequilibrium molecular dynamics simulation data. Estimates for the magnitude and sign of the coupling parameter in the free energy model are made treating the bending modulus as a function of composition. A procedure for assigning the remaining parameters in the free energy model is also outlined. It is found that the square of the mean curvature averaged over the entire simulation box is enhanced if the strength of the bonds in the elastic network are modulated in response to local changes in the composition field. We suggest that this simulation method could also be used to determine if phase coexistence affects the stress response of the membrane to uniform dilations in area. This response, measured in the mesoscopic regime, is already known to be conditioned or renormalized by thermal undulations.
引用
收藏
页码:3242 / 3263
页数:22
相关论文
共 50 条
  • [31] Lipid bilayers, NMR relaxation, and computer simulations
    Pastor, RW
    Venable, RM
    Feller, SE
    ACCOUNTS OF CHEMICAL RESEARCH, 2002, 35 (06) : 438 - 446
  • [32] Recent development in computer simulations of lipid bilayers
    Lyubartsev, Alexander P.
    Rabinovich, Alexander L.
    SOFT MATTER, 2011, 7 (01) : 25 - 39
  • [33] Hierarchical dynamical models of lipid bilayers interacting with surfaces
    Balakrishnan, Jitendra
    Heine, David R.
    Rammohan, Aravind R.
    Raghavan, Srikanth
    Mauro, John C.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 231
  • [34] The Dynamical Transition of Lipid Multilamellar Bilayers as a Matter of Cooperativity
    Peters, Judith
    Marion, Jeremie
    Natali, Francesca
    Kats, Efim
    Bicout, Dominique J.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121 (28): : 6860 - 6868
  • [35] THEORY OF THE STRUCTURE FACTOR OF LIPID BILAYERS
    ZHANG, RT
    SUTER, RM
    NAGLE, JF
    PHYSICAL REVIEW E, 1994, 50 (06) : 5047 - 5060
  • [36] THEORY OF RIPPLE PHASES OF LIPID BILAYERS
    LUBENSKY, TC
    MACKINTOSH, FC
    PHYSICAL REVIEW LETTERS, 1993, 71 (10) : 1565 - 1568
  • [37] Investigating the Structure of Multicomponent Gel-Phase Lipid Bilayers
    Hartkamp, Remco
    Moore, Timothy C.
    Iacovella, Christopher R.
    Thompson, Michael A.
    Bulsara, Pallav A.
    Moore, David J.
    McCabe, Clare
    BIOPHYSICAL JOURNAL, 2016, 111 (04) : 813 - 823
  • [38] Dynamical Coupling Atomistic and Continuum Simulations
    Ren, Guowu
    Zhang, Dier
    Gong, Xin-Gao
    COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2011, 10 (05) : 1305 - 1314
  • [39] Direct Correlation of Structures and Nanomechanical Properties of Multicomponent Lipid Bilayers
    Sullan, Ruby May A.
    Li, James K.
    Zou, Shan
    LANGMUIR, 2009, 25 (13) : 7471 - 7477
  • [40] Atomistic Simulations of a Multicomponent Asymmetric Lipid Bilayer
    Polley, Anirban
    Vemparala, Satyavani
    Rao, Madan
    JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (45): : 13403 - 13410