Coupling field theory with mesoscopic dynamical simulations of multicomponent lipid bilayers

被引:47
|
作者
McWhirter, JL
Ayton, G
Voth, GA
机构
[1] Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
[2] Univ Utah, Henry Eyring Ctr Theoret Chem, Salt Lake City, UT 84112 USA
基金
加拿大自然科学与工程研究理事会; 美国国家卫生研究院;
关键词
D O I
10.1529/biophysj.104.045716
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
A method for simulating a two-component lipid bilayer membrane in the mesoscopic regime is presented. The membrane is modeled as an elastic network of bonded points; the spring constants of these bonds are parameterized by the microscopic bulk modulus estimated from earlier atomistic nonequilibrium molecular dynamics simulations for several bilayer mixtures of DMPC and cholesterol. The modulus depends on the composition of a point in the elastic membrane model. The dynamics of the composition field is governed by the Cahn-Hilliard equation where a free energy functional models the coupling between the composition and curvature fields. The strength of the bonds in the elastic network are then modulated noting local changes in the composition and using a fit to the nonequilibrium molecular dynamics simulation data. Estimates for the magnitude and sign of the coupling parameter in the free energy model are made treating the bending modulus as a function of composition. A procedure for assigning the remaining parameters in the free energy model is also outlined. It is found that the square of the mean curvature averaged over the entire simulation box is enhanced if the strength of the bonds in the elastic network are modulated in response to local changes in the composition field. We suggest that this simulation method could also be used to determine if phase coexistence affects the stress response of the membrane to uniform dilations in area. This response, measured in the mesoscopic regime, is already known to be conditioned or renormalized by thermal undulations.
引用
收藏
页码:3242 / 3263
页数:22
相关论文
共 50 条
  • [21] Molecular dynamics simulations of lipid bilayers
    Feller, SE
    CURRENT OPINION IN COLLOID & INTERFACE SCIENCE, 2000, 5 (3-4) : 217 - 223
  • [22] Domain coupling in asymmetric lipid bilayers
    Kiessling, Volker
    Wan, Chen
    Tamm, Lukas K.
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2009, 1788 (01): : 64 - 71
  • [23] Domain coupling in asymmetric lipid bilayers
    Tamm, Lukas K.
    Wan, Chen
    Kiessling, Volker
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2009, 237
  • [24] Micropatterned, Multicomponent Supported Lipid Bilayers for Cellular Systems
    Dutta, Debjit
    Kam, Lance C.
    MICROPATTERNING IN CELL BIOLOGY, PT B, 2014, 120 : 53 - 67
  • [25] Heterogeneous molecular distribution in supported multicomponent lipid bilayers
    Tokumasu, F
    Hwang, J
    Dvorak, JA
    LANGMUIR, 2004, 20 (03) : 614 - 618
  • [26] Theory and simulations of mesoscopic morphological transitions
    Nonomura, M
    Ohta, T
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2002, 304 (1-2) : 77 - 84
  • [27] Molecular dynamics simulations of rupture in lipid bilayers
    Tomasini, Michael D.
    Rinaldi, Carlos
    Tomassone, M. Silvina
    EXPERIMENTAL BIOLOGY AND MEDICINE, 2010, 235 (02) : 181 - 188
  • [28] Molecular dynamics simulations of proteins in lipid bilayers
    Gumbart, J
    Wang, Y
    Aksimentiev, A
    Tajkhorshid, E
    Schulten, K
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2005, 15 (04) : 423 - 431
  • [29] Molecular dynamics simulations of unsaturated lipid bilayers
    Rabinovich, AL
    Balabaev, NK
    FOURTH INTERNATIONAL WORKSHOP ON NONDESTRUCTIVE TESTING AND COMPUTER SIMULATIONS IN SCIENCE AND ENGINEERING, 2001, 4348 : 215 - 224
  • [30] Coarse-grained simulations of lipid bilayers
    Stevens, MJ
    JOURNAL OF CHEMICAL PHYSICS, 2004, 121 (23): : 11942 - 11948