Here, variable to maximal chlorophyll fluorescence ratio (F (v) : F (m) ) was used to determine light history of Microcystis aeruginosa colonies in a shallow, stratified lake. As insolation increased, the lake stratified and M. aeruginosa colonies displayed a depression in F (v) : F (m) that became less severe with depth. In the afternoon, wind speed increased, entraining colonies and disrupting the discrete depth variable F (v) : F (m) response. The point where the photochemical response became homogenized allowed determination of the water friction velocity necessary to entrain colonies of M. aeruginosa (u* = 0.003 m s(-1) ). Rates of F (v) : F (m) depression were dependent upon the photon flux density, whereas the rate of recovery of F (v) : F (m) was dependent upon the historical photon density. A model is presented which models F (v) : F (m) response to five mixing scenarios: a stratified water body with no motion and no vertical migration; a cell circulating within the surface mixed layer of the Torrens Lake; a nocturnally mixed water column, which stratifies at dawn, allowing vertical migration of positively buoyant M. aeruginosa colonies; organized motion with a Langmuir circulation; and a simulation of turbulent water motion.