A new classification of Cyperaceae (Poales) supported by phylogenomic data

被引：86

作者：

Larridon, Isabel ^{[1
,2
]}

Zuntini, Alexandre R. ^{[1
]}

Leveille-Bourret, Etienne ^{[3
]}

Barrett, Russell L. ^{[4
]}

Starr, Julian R. ^{[5
]}

Muasya, A. Muthama ^{[1
,6
]}

Villaverde, Tamara ^{[7
]}

Bauters, Kenneth ^{[8
]}

Brewer, Grace E. ^{[1
]}

Bruhl, Jeremy J. ^{[9
]}

Costa, Suzana M. ^{[10
]}

Elliott, Tammy L. ^{[11
]}

Epitawalage, Niroshini ^{[1
]}

Escudero, Marcial ^{[12
]}

Fairlie, Isabel ^{[1
,13
]}

Goetghebeur, Paul ^{[2
]}

Hipp, Andrew L. ^{[14
,15
]}

Jimenez-Mejias, Pedro ^{[16
,17
]}

Sabino Kikuchi, Izai A. B. ^{[1
,18
]}

Luceno, Modesto ^{[19
]}

Marquez-Corro, Jose Ignacio ^{[19
]}

Martin-Bravo, Santiago ^{[19
]}

Maurin, Olivier ^{[1
]}

Pokorny, Lisa ^{[1
,20
]}

Roalson, Eric H. ^{[21
]}

Semmouri, Ilias ^{[22
]}

Simpson, David A. ^{[1
,23
]}

Spalink, Daniel ^{[24
]}

Thomas, W. Wayt ^{[25
]}

Wilson, Karen L. ^{[4
]}

Xanthos, Martin ^{[1
]}

Forest, Felix ^{[1
]}

Baker, William J. ^{[1
]}

机构：

[1] Royal Bot Gardens, Richmond TW9 3AE, Surrey, England

[2] Univ Ghent, Dept Biol, Systemat & Evolutionary Bot Lab, KL Ledeganckstr 35, B-9000 Ghent, Belgium

[3] Univ Montreal, Inst Rech Biol Vegetale IRBV, Montreal, PQ H1X 2B2, Canada

[4] Royal Bot Gardens, Natl Herbarium New South Wales, Mrs Macquaries Rd, Sydney, NSW 2000, Australia

[5] Univ Ottawa, Dept Biol, Ottawa, ON K1N 6N5, Canada

[6] Univ Cape Town, Dept Biol Sci, Bolus Herbarium, Private Bag X3, ZA-7701 Cape Town, South Africa

[7] Univ Almeria, Carretera Sacramento S-N, Almeria 04120, Spain

[8] Bot Garden Meise, Nieuwelaan 38, B-1860 Meise, Belgium

[9] Univ New England, Sch Environm & Rural Sci, Bot, Armidale, NSW 2351, Australia

[10] Univ Fed Lavras, Dept Biol, Caixa Postal 3037, BR-37200000 Lavras, MG, Brazil

[11] Masaryk Univ, Dept Bot & Zool, Fac Sci, Kotlarska 2, Brno 61137, Czech Republic

[12] Univ Seville, Dept Biol Vegetal & Ecol, Carretera Profesor Garcia Gonzalez S-N, Seville 41012, Spain

[13] Univ Sheffield, Dept Anim & Plant Sci, Alfred Denny Bldg, Sheffield S10 2TN, S Yorkshire, England

[14] Morton Arboretum, 4100 Illinois Route 53, Lisle, IL 60532 USA

[15] Field Museum, 1400S Lake Shore Dr, Chicago, IL 60605 USA

[16] Univ Autonoma Madrid, Fac Ciencias Biol, Dept Biol Bot, C Darwin 2, Madrid 28049, Spain

[17] Univ Autonoma Madrid, Ctr Investigac Biodiversidad & Cambio Global CIBC, Madrid 28049, Spain

[18] Leiden Univ, Hortus Bot Leiden, POB 9500, NL-2300 RA Leiden, Netherlands

[19] Univ Pablo de Olavide, Dept Mol Biol & Biochem Engn, Bot Area, Carretera Utrera Km 1, Seville 41013, Spain

[20] UPM INIA, Ctr Plant Biotechnol & Genom CBGP, Madrid 28223, Spain

[21] Washington State Univ, Sch Biol Sci, Pullman, WA 99164 USA

[22] Univ Ghent, Fac Biosci Engn, Lab Environm Toxicol & Aquat Ecol, B-9000 Ghent, Belgium

[23] Trinity Coll Dublin, Sch Nat Sci, Dept Bot, Dublin 2, Ireland

[24] Texas A&M Univ, Dept Ecol & Conservat Biol, College Stn, TX 77843 USA

[25] New York Bot Garden, 2900 Southern Blvd, Bronx, NY 10458 USA

来源：

JOURNAL OF SYSTEMATICS AND EVOLUTION | 2021年 / 59卷 / 04期

基金：

加拿大自然科学与工程研究理事会;

关键词：

Angiosperms353; classification; Cyperaceae; phylogenomics; Poales; systematics; targeted sequencing; taxonomy; SPECIES TREE RECONSTRUCTION; DNA-SEQUENCE DATA; TRIBE SCHOENEAE; ELEOCHARIS CYPERACEAE; TAXONOMIC REVISION; SEDGES CYPERACEAE; CAREX CYPERACEAE; INFRAGENERIC CLASSIFICATION; TETRARIA CYPERACEAE; MOLECULAR PHYLOGENY;

D O I：

10.1111/jse.12757

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

Cyperaceae (sedges) are the third largest monocot family and are of considerable economic and ecological importance. Sedges represent an ideal model family to study evolutionary biology due to their species richness, global distribution, large discrepancies in lineage diversity, broad range of ecological preferences, and adaptations including multiple origins of C-4 photosynthesis and holocentric chromosomes. Goetghebeur ' s seminal work on Cyperaceae published in 1998 provided the most recent complete classification at tribal and generic level, based on a morphological study of Cyperaceae inflorescence, spikelet, flower, and embryo characters, plus anatomical and other information. Since then, several family-level molecular phylogenetic studies using Sanger sequence data have been published. Here, more than 20 years after the last comprehensive classification of the family, we present the first family-wide phylogenomic study of Cyperaceae based on targeted sequencing using the Angiosperms353 probe kit sampling 311 accessions. In addition, 62 accessions available from GenBank were mined for overlapping reads and included in the phylogenomic analyses. Informed by this backbone phylogeny, a new classification for the family at the tribal, subtribal, and generic levels is proposed. The majority of previously recognized suprageneric groups are supported, and for the first time, we establish support for tribe Cryptangieae as a clade including the genus Koyamaea. We provide a taxonomic treatment including identification keys and diagnoses for the 2 subfamilies, 24 tribes, and 10 subtribes, and basic information on the 95 genera. The classification includes five new subtribes in tribe Schoeneae: Anthelepidinae, Caustiinae, Gymnoschoeninae, Lepidospermatinae, and Oreobolinae.

引用

页码：852 / 895

页数：44

共 180 条

[1]

ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999

[2]

Alves Marccus, 2015, Rodriguésia, V66, P379, DOI 10.1590/2175-7860201566208

[3]

[Anonymous], 2019, TREEIO BASE CLASSES

[4]

Bagnall R. S., 2009, OXFORD HDB PAPYROLOG

[5]

Baker WJ., 431589 BIORXIV

[6]

Bakker Freek T., 2017, Webbia, V72, P35, DOI 10.1080/00837792.2017.1313383

[7]

Banack SA, 2004, ECON BOT, V58, P11, DOI 10.1663/0013-0001(2004)058[0011:ICACOT]2.0.CO

[8]

[9] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[10] Reassessment of the taxonomic status of Cyperaceae on Rapa Iti, Austral Islands, French Polynesia, with a new combination, Morelotia involuta [J].

Barrett, Russell L. ;

Taputuarai, Ravahere ;

Meyer, Jean-Yves H. ;

Bruhl, Jeremy J. ;

Wilson, Karen L. .

TELOPEA, 2021, 24 :171-187

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