Electron Tomography of Cryo-Immobilized Plant Tissue: A Novel Approach to Studying 3D Macromolecular Architecture of Mature Plant Cell Walls In Situ

被引:20
作者
Sarkar, Purbasha [1 ,2 ]
Bosneaga, Elena [1 ,2 ]
Yap, Edgar G., Jr. [2 ]
Das, Jyotirmoy [1 ]
Tsai, Wen-Ting [2 ]
Cabal, Angelo [1 ]
Neuhaus, Erica [2 ]
Maji, Dolonchampa [1 ]
Kumar, Shailabh [1 ]
Joo, Michael [2 ]
Yakovlev, Sergey [3 ]
Csencsits, Roseann [2 ]
Yu, Zeyun [4 ]
Bajaj, Chandrajit [5 ,6 ]
Downing, Kenneth H. [2 ]
Auer, Manfred [1 ,2 ]
机构
[1] Univ Calif Berkeley, Energy Biosci Inst, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Life Sci, Berkeley, CA 94720 USA
[3] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Mat Sci, Berkeley, CA 94720 USA
[4] Univ Wisconsin, Dept Comp Sci, Milwaukee, WI 53201 USA
[5] Univ Texas Austin, Dept Comp Sci, Austin, TX 78712 USA
[6] Univ Texas Austin, Inst Computat Engn & Sci, Austin, TX 78712 USA
基金
美国国家卫生研究院;
关键词
ATOMIC-FORCE MICROSCOPY; RAPID FREEZING SPRF; CRYOELECTRON MICROSCOPY; CELLULOSE MICROFIBRILS; SPECIMEN PREPARATION; ANCHORED PROTEIN; FINE-STRUCTURE; CROSS-LINKS; GROWTH; EXPANSION;
D O I
10.1371/journal.pone.0106928
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cost-effective production of lignocellulosic biofuel requires efficient breakdown of cell walls present in plant biomass to retrieve the wall polysaccharides for fermentation. In-depth knowledge of plant cell wall composition is therefore essential for improving the fuel production process. The precise spatial three-dimensional (3D) organization of cellulose, hemicellulose, pectin and lignin within plant cell walls remains unclear to date since the microscopy techniques used so far have been limited to two-dimensional, topographic or low-resolution imaging, or required isolation or chemical extraction of the cell walls. In this paper we demonstrate that by cryo-immobilizing fresh tissue, then either cryo-sectioning or freeze-substituting and resin embedding, followed by cryo-or room temperature (RT) electron tomography, respectively, we can visualize previously unseen details of plant cell wall architecture in 3D, at macromolecular resolution (similar to 2 nm), and in near-native state. Qualitative and quantitative analyses showed that wall organization of cryo-immobilized samples were preserved remarkably better than conventionally prepared samples that suffer substantial extraction. Lignin-less primary cell walls were well preserved in both self-pressurized rapidly frozen (SPRF), cryo-sectioned samples as well as high-pressure frozen, freeze-substituted and resin embedded (HPF-FS-resin) samples. Lignin-rich secondary cell walls appeared featureless in HPF-FS-resin sections presumably due to poor stain penetration, but their macromolecular features could be visualized in unprecedented details in our cryo-sections. While cryo-tomography of vitreous tissue sections is currently proving to be instrumental in developing 3D models of lignin-rich secondary cell walls, here we confirm that the technically easier method of RT-tomography of HPF-FS-resin sections could be used immediately for routine study of low-lignin cell walls. As a proof of principle, we characterized the primary cell walls of a mutant (cob-6) and wild type Arabidopsis hypocotyl parenchyma cells by RT-tomography of HPF-FS-resin sections, and detected a small but significant difference in spatial organization of cellulose microfibrils in the mutant walls.
引用
收藏
页数:16
相关论文
共 87 条
[81]   Dual-axis electron tomography: a new approach for investigating the spatial organization of wood cellulose microfibrils [J].
Xu, Ping ;
Donaldson, Lloyd A. ;
Gergely, Zachary R. ;
Staehelin, L. Andrew .
WOOD SCIENCE AND TECHNOLOGY, 2007, 41 (02) :101-116
[82]   Mechanical performance and cellulose microfibrils in wood with high S2 microfibril angles [J].
Xu, Ping ;
Liu, Huawu ;
Donaldson, Lloyd A. ;
Zhang, Yi .
JOURNAL OF MATERIALS SCIENCE, 2011, 46 (02) :534-540
[83]   Freezing in sealed capillaries for preparation of frozen hydrated sections [J].
Yakovlev, S. ;
Downing, K. H. .
JOURNAL OF MICROSCOPY, 2011, 244 (03) :235-247
[84]  
Yakovlev S, 2010, MICROSC MICROANAL S2, V16, P860
[85]   Computational Approaches for Automatic Structural Analysis of Large Biomolecular Complexes [J].
Yu, Zeyun ;
Bajaj, Chandrajit .
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2008, 5 (04) :568-582
[86]   Plants to power: bioenergy to fuel the future [J].
Yuan, Joshua S. ;
Tiller, Kelly H. ;
Al-Ahmad, Hani ;
Stewart, Nathan R. ;
Stewart, C. Neal, Jr. .
TRENDS IN PLANT SCIENCE, 2008, 13 (08) :421-429
[87]   Macromolecular structure modeling from 3D EM using VolRover 2.0 [J].
Zhang, Qin ;
Bettadapura, Radhakrishna ;
Bajaj, Chandrajit .
BIOPOLYMERS, 2012, 97 (09) :709-731