Electron Tomography of Cryo-Immobilized Plant Tissue: A Novel Approach to Studying 3D Macromolecular Architecture of Mature Plant Cell Walls In Situ

被引:20
作者
Sarkar, Purbasha [1 ,2 ]
Bosneaga, Elena [1 ,2 ]
Yap, Edgar G., Jr. [2 ]
Das, Jyotirmoy [1 ]
Tsai, Wen-Ting [2 ]
Cabal, Angelo [1 ]
Neuhaus, Erica [2 ]
Maji, Dolonchampa [1 ]
Kumar, Shailabh [1 ]
Joo, Michael [2 ]
Yakovlev, Sergey [3 ]
Csencsits, Roseann [2 ]
Yu, Zeyun [4 ]
Bajaj, Chandrajit [5 ,6 ]
Downing, Kenneth H. [2 ]
Auer, Manfred [1 ,2 ]
机构
[1] Univ Calif Berkeley, Energy Biosci Inst, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Life Sci, Berkeley, CA 94720 USA
[3] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Mat Sci, Berkeley, CA 94720 USA
[4] Univ Wisconsin, Dept Comp Sci, Milwaukee, WI 53201 USA
[5] Univ Texas Austin, Dept Comp Sci, Austin, TX 78712 USA
[6] Univ Texas Austin, Inst Computat Engn & Sci, Austin, TX 78712 USA
基金
美国国家卫生研究院;
关键词
ATOMIC-FORCE MICROSCOPY; RAPID FREEZING SPRF; CRYOELECTRON MICROSCOPY; CELLULOSE MICROFIBRILS; SPECIMEN PREPARATION; ANCHORED PROTEIN; FINE-STRUCTURE; CROSS-LINKS; GROWTH; EXPANSION;
D O I
10.1371/journal.pone.0106928
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cost-effective production of lignocellulosic biofuel requires efficient breakdown of cell walls present in plant biomass to retrieve the wall polysaccharides for fermentation. In-depth knowledge of plant cell wall composition is therefore essential for improving the fuel production process. The precise spatial three-dimensional (3D) organization of cellulose, hemicellulose, pectin and lignin within plant cell walls remains unclear to date since the microscopy techniques used so far have been limited to two-dimensional, topographic or low-resolution imaging, or required isolation or chemical extraction of the cell walls. In this paper we demonstrate that by cryo-immobilizing fresh tissue, then either cryo-sectioning or freeze-substituting and resin embedding, followed by cryo-or room temperature (RT) electron tomography, respectively, we can visualize previously unseen details of plant cell wall architecture in 3D, at macromolecular resolution (similar to 2 nm), and in near-native state. Qualitative and quantitative analyses showed that wall organization of cryo-immobilized samples were preserved remarkably better than conventionally prepared samples that suffer substantial extraction. Lignin-less primary cell walls were well preserved in both self-pressurized rapidly frozen (SPRF), cryo-sectioned samples as well as high-pressure frozen, freeze-substituted and resin embedded (HPF-FS-resin) samples. Lignin-rich secondary cell walls appeared featureless in HPF-FS-resin sections presumably due to poor stain penetration, but their macromolecular features could be visualized in unprecedented details in our cryo-sections. While cryo-tomography of vitreous tissue sections is currently proving to be instrumental in developing 3D models of lignin-rich secondary cell walls, here we confirm that the technically easier method of RT-tomography of HPF-FS-resin sections could be used immediately for routine study of low-lignin cell walls. As a proof of principle, we characterized the primary cell walls of a mutant (cob-6) and wild type Arabidopsis hypocotyl parenchyma cells by RT-tomography of HPF-FS-resin sections, and detected a small but significant difference in spatial organization of cellulose microfibrils in the mutant walls.
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页数:16
相关论文
共 87 条
[21]   Fine structure of the Deinococcus radiodurans nucleoid revealed by cryoelectron microscopy of vitreous sections [J].
Eltsov, M ;
Dubochet, J .
JOURNAL OF BACTERIOLOGY, 2005, 187 (23) :8047-8054
[22]   An improved algorithm for anisotropic nonlinear diffusion for denoising cryo-tomograms [J].
Fernández, JJ ;
Li, S .
JOURNAL OF STRUCTURAL BIOLOGY, 2003, 144 (1-2) :152-161
[23]   Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion [J].
Frangakis, AS ;
Hegerl, R .
JOURNAL OF STRUCTURAL BIOLOGY, 2001, 135 (03) :239-250
[24]   ULTRASTRUCTURE OF WOOD [J].
FREYWYSS.A .
WOOD SCIENCE AND TECHNOLOGY, 1968, 2 (02) :73-&
[25]   ARCHITECTURE OF THE CELL-WALL OF A GREEN-ALGA, OOCYSTIS-APICULATA [J].
FUJINO, T ;
ITOH, T .
PROTOPLASMA, 1994, 180 (1-2) :39-48
[26]  
Fujino T, 2000, PLANT CELL PHYSIOL, V41, P486, DOI 10.1093/pcp/41.4.486
[27]   Identification of a cellulose synthase-associated protein required for cellulose biosynthesis [J].
Gu, Ying ;
Kaplinsky, Nick ;
Bringmann, Martin ;
Cobb, Alex ;
Carroll, Andrew ;
Sampathkumar, Arun ;
Baskin, Tobias I. ;
Persson, Staffan ;
Somerville, Chris R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (29) :12866-12871
[28]   Self-pressurized rapid freezing (SPRF) as a simple fixation method for cryo-electron microscopy of vitreous sections [J].
Han, Hong-Mei ;
Huebinger, Jan ;
Grabenbauer, Markus .
JOURNAL OF STRUCTURAL BIOLOGY, 2012, 178 (02) :84-87
[29]  
Hayat MA, 2000, PRINCIPLES AND TECHNIQUES OF ELECTRON MICROSCOPY: BIOLOGICAL APPLICATIONS, FOURTH EDITION, P4
[30]  
HEYN ANJ, 1969, J ULTRA MOL STRUCT R, V26, P52