Paludisphaera borealis gen. nov., sp nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov.

被引:30
|
作者
Kulichevskaya, Irina S. [1 ]
Ivanova, Anastasia A. [1 ]
Suzina, Natalia E. [2 ]
Rijpstra, W. Irene C. [3 ]
Damste, Jaap S. Sinninghe [3 ,4 ]
Dedysh, Svetlana N. [1 ]
机构
[1] Russian Acad Sci, Biotechnol Res Ctr, Winogradsky Inst Microbiol, Moscow 119071, Russia
[2] Russian Acad Sci, GK Skryabin Inst Biochem & Physiol Microorganism, Pushchino 142292, Moscow Region, Russia
[3] NIOZ Royal Netherlands Inst Sea Res, Dept Marine Organ Biogeochem, POB 59, NL-1790 AB Den Burg, Netherlands
[4] Univ Utrecht, Dept Earth Sci, Fac Geosci, Geochem, Utrecht, Netherlands
关键词
COMPLETE GENOME SEQUENCE; UNCULTURED BACTERIA; PALLIDA;
D O I
10.1099/ijsem.0.000799
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two isolates of aerobic, budding, pink-pigmented bacteria, designated strains PX4(T) and PT1, were isolated from a boreal Sphagnum peat bog and a forested tundra wetland. Cells of these strains were non-motile spheres that occurred singly or in short chains. Novel isolates were capable of growth at pH values between 3.5 and 6.5 (optimum at pH 5.0-5.5) and at temperatures between 6 and 30 degrees C (optimum at 15-25 degrees C). Most sugars and a number of polysaccharides including pectin, xylan, lichenin and Phytagel were used as growth substrates. The major fatty acids were C-16 : 0, C-18 : 1 omega 9 and C-18 : 0; the major polar lipids were phosphocholine and trimethylornithine. The quinone was menaquinone-6, and the G+C content of the DNA was 66 mol%. Strains PX4(T) and PT1 were members of the order Planctomycetales and displayed 93-94 % 16S rRNA gene sequence similarity to Aquisphaera giovannonii, 91-92 % to species of the genus Singulisphaera and 90-91 % to Isosphaera pallida. The two novel strains, however, differed from members of these genera by cell morphology, substrate utilization pattern and a number of physiological characteristics. Based on these data, the novel isolates should be considered as representing a novel genus and species of planctomycetes, for which the name Paludisphaera borealis gen. nov., sp. nov., is proposed. The type strain is PX4(T) (=DSM 28747(T)=VKM B-2904(T)). We also suggest the establishment of a novel family, Isosphaeraceae fam. nov., to accommodate stalk-free planctomycetes with spherical cells, which can be assembled in short chains, long filaments or shapeless aggregates. This family includes the genera Isosphaera, Aquisphaera, Singulisphaera and Paludisphaera.
引用
收藏
页码:837 / 844
页数:8
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