A Noisy Paracrine Signal Determines the Cellular NF-κB Response to Lipopolysaccharide

被引:126
作者
Lee, Timothy K. [1 ]
Denny, Elissa M. [1 ]
Sanghvi, Jayodita C. [1 ]
Gaston, Jahlionais E. [2 ]
Maynard, Nathaniel D. [1 ]
Hughey, Jacob J. [1 ]
Covert, Markus W. [1 ]
机构
[1] Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
[2] CALTECH, Div Biol, Pasadena, CA 91125 USA
关键词
TOLL-LIKE-RECEPTORS; GENE-EXPRESSION; TRANSCRIPTION FACTORS; TEMPORAL CONTROL; PATHWAY; ALPHA; ACTIVATION; DYNAMICS; CELLS; MODEL;
D O I
10.1126/scisignal.2000599
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nearly identical cells can exhibit substantially different responses to the same stimulus. We monitored the nuclear localization dynamics of nuclear factor kappa B (NF-kappa B) in single cells stimulated with tumor necrosis factor-alpha (TNF-alpha) and lipopolysaccharide (LPS). Cells stimulated with TNF-alpha have quantitative differences in NF-kappa B nuclear localization, whereas LPS-stimulated cells can be clustered into transient or persistent responders, representing two qualitatively different groups based on the NF-kappa B response. These distinct behaviors can be linked to a secondary paracrine signal secreted at low concentrations, such that not all cells undergo a second round of NF-kappa B activation. From our single-cell data, we built a computational model that captures cell variability, as well as population behaviors. Our findings show that mammalian cells can create "noisy" environments to produce diversified responses to stimuli.
引用
收藏
页数:9
相关论文
共 54 条
[1]   Stochastic switching as a survival strategy in fluctuating environments [J].
Acar, Murat ;
Mettetal, Jerome T. ;
van Oudenaarden, Alexander .
NATURE GENETICS, 2008, 40 (04) :471-475
[2]   Motif module map reveals enforcement of aging by continual NF-κB activity [J].
Adler, Adam S. ;
Sinha, Saurabh ;
Kawahara, Tiara L. A. ;
Zhang, Jennifer Y. ;
Segal, Eran ;
Chang, Howard Y. .
GENES & DEVELOPMENT, 2007, 21 (24) :3244-3257
[3]   Toll-like receptors: critical proteins linking innate and acquired immunity [J].
Akira, S ;
Takeda, K ;
Kaisho, T .
NATURE IMMUNOLOGY, 2001, 2 (08) :675-680
[4]   Pulsatile Stimulation Determines Timing and Specificity of NF-κB-Dependent Transcription [J].
Ashall, Louise ;
Horton, Caroline A. ;
Nelson, David E. ;
Paszek, Pawel ;
Harper, Claire V. ;
Sillitoe, Kate ;
Ryan, Sheila ;
Spiller, David G. ;
Unitt, John F. ;
Broomhead, David S. ;
Kell, Douglas B. ;
Rand, David A. ;
See, Violaine ;
White, Michael R. H. .
SCIENCE, 2009, 324 (5924) :242-246
[5]   Bacterial persistence as a phenotypic switch [J].
Balaban, NQ ;
Merrin, J ;
Chait, R ;
Kowalik, L ;
Leibler, S .
SCIENCE, 2004, 305 (5690) :1622-1625
[6]   Control of oncogenesis and cancer therapy resistance by the transcription factor NF-κB [J].
Baldwin, AS .
JOURNAL OF CLINICAL INVESTIGATION, 2001, 107 (03) :241-246
[7]   Comment on "Oscillations in NF-κB signaling control the dynamics of gene expression" [J].
Barken, D ;
Wang, CJ ;
Kearns, J ;
Cheong, R ;
Hoffmann, A ;
Levchenko, A .
SCIENCE, 2005, 308 (5718)
[8]   Toll-like receptor signaling pathways [J].
Barton, GM ;
Medzhitov, R .
SCIENCE, 2003, 300 (5625) :1524-1525
[9]   Stochastic model of autocrine and paracrine signals in cell culture assays [J].
Batsilas, L ;
Berezhkovskii, AM ;
Shvartsman, SY .
BIOPHYSICAL JOURNAL, 2003, 85 (06) :3659-3665
[10]   A physical and functional map of the human TNF-α NF-κB signal transduction pathway [J].
Bouwmeester, T ;
Bauch, A ;
Ruffner, H ;
Angrand, PO ;
Bergamini, G ;
Croughton, K ;
Cruciat, C ;
Eberhard, D ;
Gagneur, J ;
Ghidelli, S ;
Hopf, C ;
Huhse, B ;
Mangano, R ;
Michon, AM ;
Schirle, M ;
Schlegl, J ;
Schwab, M ;
Stein, MA ;
Bauer, A ;
Casari, G ;
Drewes, G ;
Gavin, AC ;
Jackson, DB ;
Joberty, G ;
Neubauer, G ;
Rick, J ;
Kuster, B ;
Superti-Furga, G .
NATURE CELL BIOLOGY, 2004, 6 (02) :97-+