How to Obtain a High Quality ctDNA in Lymphoma Patients: Preanalytical Tips and Tricks

被引:8
作者
Bourbon, Estelle [1 ]
Alcazer, Vincent [1 ]
Cheli, Estelle [1 ]
Huet, Sarah [1 ,2 ]
Sujobert, Pierre [1 ,2 ]
机构
[1] Hosp Civils Lyon, Serv Hematol Biol, Hop Lyon Sud, F-69495 Lyon, France
[2] Univ Lyon 1, Lymphoma Immunobiol Team, Fac Med & Maieut Lyon Sud Charles Merieux, F-69921 Oullins, France
关键词
ctDNA; lymphoma; preanalytical; CELL-FREE-DNA; CIRCULATING TUMOR DNA; TUBE SYSTEM TRANSPORT; PLASMA DNA; CANCER; URINE; EXTRACTION; MUTATIONS; STORAGE; ORIGIN;
D O I
10.3390/ph14070617
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
The analysis of circulating tumor DNA (ctDNA) released by tumor cells holds great promise for patients with lymphoma, to refine the diagnostic procedure, clarify the prognosis, monitor the response to treatment, and detect relapses earlier. One of the main challenges of the coming years is to adapt techniques from highly specialized translational teams to routine laboratories as this requires a careful technical and clinical validation, and we have to achieve this as fast as possible to transform a promising biomarker into a routine analysis to have a direct consequence on patient care. Whatever the analytical technology used, the prerequisite is to obtain high yields of ctDNA of optimal quality. In this review, we propose a step-by-step description of the preanalytical process to obtain high-quality ctDNA, emphasizing the technical choices that need to be made and the experimental data that can support these choices.
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页数:10
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共 48 条
[1]   Detection of Circulating Tumor DNA in Early- and Late-Stage Human Malignancies [J].
Bettegowda, Chetan ;
Sausen, Mark ;
Leary, Rebecca J. ;
Kinde, Isaac ;
Wang, Yuxuan ;
Agrawal, Nishant ;
Bartlett, Bjarne R. ;
Wang, Hao ;
Luber, Brandon ;
Alani, Rhoda M. ;
Antonarakis, Emmanuel S. ;
Azad, Nilofer S. ;
Bardelli, Alberto ;
Brem, Henry ;
Cameron, John L. ;
Lee, Clarence C. ;
Fecher, Leslie A. ;
Gallia, Gary L. ;
Gibbs, Peter ;
Le, Dung ;
Giuntoli, Robert L. ;
Goggins, Michael ;
Hogarty, Michael D. ;
Holdhoff, Matthias ;
Hong, Seung-Mo ;
Jiao, Yuchen ;
Juhl, Hartmut H. ;
Kim, Jenny J. ;
Siravegna, Giulia ;
Laheru, Daniel A. ;
Lauricella, Calogero ;
Lim, Michael ;
Lipson, Evan J. ;
Marie, Suely Kazue Nagahashi ;
Netto, George J. ;
Oliner, Kelly S. ;
Olivi, Alessandro ;
Olsson, Louise ;
Riggins, Gregory J. ;
Sartore-Bianchi, Andrea ;
Schmidt, Kerstin ;
Shih, Ie-Ming ;
Oba-Shinjo, Sueli Mieko ;
Siena, Salvatore ;
Theodorescu, Dan ;
Tie, Jeanne ;
Harkins, Timothy T. ;
Veronese, Silvio ;
Wang, Tian-Li ;
Weingart, Jon D. .
SCIENCE TRANSLATIONAL MEDICINE, 2014, 6 (224)
[2]   Isolation and extraction of circulating tumor DNA from patients with small cell lung cancer [J].
Board, Ruth E. ;
Williams, Victoria S. ;
Knight, Lucy ;
Shaw, Jacqueline ;
Greystoke, Alastair ;
Ranson, Malcolm ;
Dive, Caroline ;
Blackhall, Fiona H. ;
Hughes, Andrew .
CIRCULATING NUCLEIC ACIDS IN PLASMA AND SERUM V, 2008, 1137 :98-107
[3]   Cell free circulating tumor DNA in cerebrospinal fluid detects and monitors central nervous system involvement of B-cell lymphomas [J].
Bobillo, Sabela ;
Crespo, Marta ;
Escudero, Laura ;
Mayor, Regina ;
Raheja, Priyanka ;
Carpio, Cecilia ;
Rubio-Perez, Carlota ;
Tazon-Vega, Barbara ;
Palacio, Carlos ;
Carabia, Julia ;
Jimenez, Isabel ;
Nieto, Juan C. ;
Montoro, Julia ;
Martinez-Ricarte, Francisco ;
Castellvi, Josep ;
Simo, Marc ;
Puigdefabregas, Lluis ;
Abrisqueta, Pau ;
Bosch, Francesc ;
Seoane, Joan .
HAEMATOLOGICA, 2021, 106 (02) :513-521
[4]  
Botezatu I, 2000, CLIN CHEM, V46, P1078
[5]   Early detection of cancer using circulating tumor DNA: biological, physiological and analytical considerations [J].
Bronkhorst, Abel Jacobus ;
Ungerer, Vida ;
Holdenrieder, Stefan .
CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES, 2020, 57 (04) :253-269
[6]  
Bronkhorst Abel Jacobus, 2019, Biomol Detect Quantif, V17, P100087, DOI 10.1016/j.bdq.2019.100087
[7]   Cerebrospinal fluid-derived circulating tumour DNA better represents the genomic alterations of brain tumours than plasma [J].
De Mattos-Arruda, Leticia ;
Mayor, Regina ;
Ng, Charlotte K. Y. ;
Weigelt, Britta ;
Martinez-Ricarte, Francisco ;
Torrejon, Davis ;
Oliveira, Mafalda ;
Arias, Alexandra ;
Raventos, Carolina ;
Tang, Jiabin ;
Guerini-Rocco, Elena ;
Martinez-Saez, Elena ;
Lois, Sergio ;
Marin, Oscar ;
de la Cruz, Xavier ;
Piscuoglio, Salvatore ;
Towers, Russel ;
Vivancos, Ana ;
Peg, Vicente ;
Ramon y Cajal, Santiago ;
Carles, Joan ;
Rodon, Jordi ;
Gonzalez-Cao, Maria ;
Tabernero, Josep ;
Felip, Enriqueta ;
Sahuquillo, Joan ;
Berger, Michael F. ;
Cortes, Javier ;
Reis-Filho, Jorge S. ;
Seoane, Joan .
NATURE COMMUNICATIONS, 2015, 6
[8]   Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology [J].
Deveson, Ira W. ;
Gong, Binsheng ;
Lai, Kevin ;
LoCoco, Jennifer S. ;
Richmond, Todd A. ;
Schageman, Jeoffrey ;
Zhang, Zhihong ;
Novoradovskaya, Natalia ;
Willey, James C. ;
Jones, Wendell ;
Kusko, Rebecca ;
Chen, Guangchun ;
Madala, Bindu Swapna ;
Blackburn, James ;
Stevanovski, Igor ;
Bhandari, Ambica ;
Close, Devin ;
Conroy, Jeffrey ;
Hubank, Michael ;
Marella, Narasimha ;
Mieczkowski, Piotr A. ;
Qiu, Fujun ;
Sebra, Robert ;
Stetson, Daniel ;
Sun, Lihyun ;
Szankasi, Philippe ;
Tan, Haowen ;
Tang, Lin-ya ;
Arib, Hanane ;
Best, Hunter ;
Burgher, Blake ;
Bushel, Pierre R. ;
Casey, Fergal ;
Cawley, Simon ;
Chang, Chia-Jung ;
Choi, Jonathan ;
Dinis, Jorge ;
Duncan, Daniel ;
Eterovic, Agda Karina ;
Feng, Liang ;
Ghosal, Abhisek ;
Giorda, Kristina ;
Glenn, Sean ;
Happe, Scott ;
Haseley, Nathan ;
Horvath, Kyle ;
Hung, Li-Yuan ;
Jarosz, Mirna ;
Kushwaha, Garima ;
Li, Dan .
NATURE BIOTECHNOLOGY, 2021, 39 (09) :1115-+
[9]   Circulating cell free DNA: Preanalytical considerations [J].
El Messaoudi, Safia ;
Rolet, Fanny ;
Mouliere, Florent ;
Thierry, Alain R. .
CLINICA CHIMICA ACTA, 2013, 424 :222-230
[10]   Circulating nucleic acids (CNAs) and cancer - A survey [J].
Fleischhacker, M. ;
Schmidt, B. .
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER, 2007, 1775 (01) :181-232