Genome-wide Association Analysis for Drought Tolerance and Associated Traits in Common Bean

被引:3
作者
Hoyos-Villegas, Valerio [1 ]
Song, Qijian [2 ]
Kelly, James D. [1 ]
机构
[1] Michigan State Univ, Dept Plant Soil & Microbial Sci, E Lansing, MI 48824 USA
[2] ARS, USDA, Soybean Genom & Improvement Lab, Beltsville, MD 20705 USA
来源
PLANT GENOME | 2017年 / 10卷 / 01期
基金
美国食品与农业研究所;
关键词
PHASEOLUS-VULGARIS L; MESOAMERICAN GENE POOL; VAPOR-PRESSURE DEFICIT; WHITE MOLD; TRANSPIRATION RESPONSE; PLANT ARCHITECTURE; LOCI ANALYSIS; QTL ANALYSIS; RESISTANCE; YIELD;
D O I
10.3835/plantgenome2015.12.0122
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
A genome-wide association study explored the genetic basis of variation for drought tolerance and related traits in a Middle American diversity panel comprising 96 common bean (Phaseolus vulgaris L.) genotypes. The panel was grown under irrigated and rainfed conditions and single nucleotide polymorphism (SNP) data were used to explore the genetic diversity and ancestry of the panel. Varying levels of admixtures and distinctly divergent individuals were observed. Estimations of genome-wide heterozygosity revealed that, on average, greater diversity is present in individuals with Mesoamerica (3.8%) ancestry, followed by admixed individuals (2.3%). The race Durango had the lowest level of heterozygosity (1.4%). We report 27 significant marker-trait associations based on best linear unbiased predictors. These associations include seven markers for shoot biomass at harvest under irrigation and five markers under rainfed conditions on P. vulgaris (Pv) chromosome Pv11, two markers for shoot biomass at flowering under irrigation on Pv02 and Pv08, two markers for seed size under irrigated and rainfed conditions on Pv09, seven markers for lodging score under irrigation on Pv02 and Pv07, one marker for leaf elongation rate on Pv03 and one for wilting score on Pv11. Positional candidate genes, including Phvul. 011G102700 on Pv11, associated with wilting, were identified. The SNP ss715639327 marker was located in the exon region of the PvSIP1;3 gene, which codes for an aquaporin associated with water movement in beans. Significant quantitative trait loci identified in this study could be used in marker-assisted breeding to accelerate genetic improvement of drought tolerance in common bean.
引用
收藏
页数:17
相关论文
共 50 条
  • [41] Evaluation of common bean genotypes for drought tolerance
    Ribeiro, Tamires
    da Silva, Daiana Alves
    de Fatima Esteves, Jose Antonio
    Giaretta Azevedo, Cleber Vinicius
    Ribeiro Goncalves, Joao Guilherme
    Morais Carbonell, Sergio Augusto
    Chiorato, Alisson Fernando
    BRAGANTIA, 2019, 78 (01) : 1 - 11
  • [42] Genome-wide association analysis of aluminum tolerance related traits in rapeseed (Brassica napusL.) during germination
    Gao, Huanhuan
    Ye, Sang
    Wu, Jiayi
    Wang, Liuyan
    Wang, Ruili
    Lei, Wei
    Meng, Lijiao
    Yuan, Fang
    Zhou, Qingyuan
    Cui, Cui
    GENETIC RESOURCES AND CROP EVOLUTION, 2021, 68 (01) : 335 - 357
  • [43] Integrating multilocus genome-wide association studies in chickpea landraces to discern the genetics of drought tolerance
    Harish, D.
    Reddy, Sneha Priya Pappula
    Kumar, Neeraj
    Bharadwaj, Chellapilla
    Kumar, Tapan
    Parida, Swaroop
    Patil, Basavanagowda S.
    Kumar, Sudhir
    Jain, Pradeep K.
    Kumar, Yogesh
    Varshney, Rajeev K.
    FRONTIERS IN SUSTAINABLE FOOD SYSTEMS, 2024, 8
  • [44] Quantitative Trait Loci Associated with Drought Tolerance in Common Bean
    Mukeshimana, Gerardine
    Butare, Louis
    Cregan, Perry B.
    Blair, Matthew W.
    Kelly, James D.
    CROP SCIENCE, 2014, 54 (03) : 923 - 938
  • [45] Genome-wide association studies for agronomical traits in a world wide spring barley collection
    Pasam, Raj K.
    Sharma, Rajiv
    Malosetti, Marcos
    van Eeuwijk, Fred A.
    Haseneyer, Grit
    Kilian, Benjamin
    Graner, Andreas
    BMC PLANT BIOLOGY, 2012, 12
  • [46] Effect of Water Deficit on Morphoagronomic and Physiological Traits of Common Bean Genotypes with Contrasting Drought Tolerance
    Androcioli, Leonardo Godoy
    Zeffa, Douglas Mariani
    Alves, Daniel Soares
    Tomaz, Juarez Pires
    Moda-Cirino, Vania
    WATER, 2020, 12 (01)
  • [47] Genome-wide association mapping of flooding tolerance in soybean
    Wu, Chengjun
    Mozzoni, Leandro A.
    Moseley, David
    Hummer, Wade
    Ye, Heng
    Chen, Pengyin
    Shannon, Grover
    Nguyen, Henry
    MOLECULAR BREEDING, 2019, 40 (01)
  • [48] Genome-wide association analysis of stress tolerance indices in an interspecific population of chickpea
    Kalve, Shweta
    Gali, Krishna Kishore
    Tar'an, Bunyamin
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [49] Genome-wide association mapping for root traits associated with frost tolerance in faba beans using KASP-SNP markers
    Sallam, Ahmed
    Moursi, Yasser S.
    Martsch, Regina
    Eltaher, Shamseldeen
    FRONTIERS IN GENETICS, 2022, 13
  • [50] Genome-wide association analysis of heat tolerance in the northern pike (Esox Lucius)
    Jiang, Yuchen
    Guo, Jiamin
    Haisa, Ayelhan
    Shen, Yubang
    AQUACULTURE, 2022, 559