Bioinformatics analysis reveals molecular connections between non-alcoholic fatty liver disease (NAFLD) and COVID-19

被引:4
作者
Abolfazli, Pouria [1 ]
Aghajanzadeh, Taha [2 ]
Ghaderinasrabad, Melina [3 ]
Nchama, Cristina Nkene Apue [1 ]
Mokhlesi, Amir [2 ]
Talkhabi, Mahmood [2 ]
机构
[1] Xi An Jiao Tong Univ, Coll Med, Xian 710061, Peoples R China
[2] Shahid Beheshti Univ, Fac Life Sci & Biotechnol, Dept Anim Sci & Marine Biol, Tehran, Iran
[3] Huazhong Univ Sci & Technol, Union Hosp, Tongji Med Coll, Wuhan 430030, Hubei, Peoples R China
关键词
COVID-19; NAFLD; SARS-CoV-2-entry factors; Protein-protein Interaction; Protein kinase; Transcription factors; miRNAs; EXPRESSION; MIR-34A; STEATOSIS; SEVERITY; SPIKE; RNA;
D O I
10.1007/s12079-022-00678-y
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The ongoing coronavirus disease 2019 (COVID-19) pandemic caused by SARS-CoV-2 has devastatingly impacted people's lives. Non-alcoholic fatty liver disease (NAFLD) is fatal comorbidity of COVID-19 seen with potential risk factors to develop severe symptoms. This research focuses on determining and elucidating the molecular factors and connections that might contribute to the severity of SARS-CoV-2 infection in NAFLD patients. Here, we comprehensively inspected the genes involved in NAFLD and SARS-CoV-2 entry factors (SCEFs) found by searching through the DisGeNet database and literature review, respectively. Further, we identified the SCEFs-related proteins through protein-protein interaction (PPI) network construction, MCODE, and Cytohubba. Next, the shared genes involved in NAFLD and SARS-CoV-2 entry, and hub gene were determined, followed by the GO and KEGG pathways analysis. X2K database was used to construct the upstream regulatory network of hub genes, as well as to identify the top ten candidates of transcription factors (TFs) and protein kinases (PKs). PPI analysis identified connections between 4 top SCEFs, including ACE, ADAM17, DPP4, and TMPRSS2 and NAFLD-related genes such as ACE, DPP4, IL-10, TNF, and AKT1. GO and KEGG analysis revealed the top ten biological processes and pathways, including cytokine-mediated signaling, PI3K-Akt, AMPK, and mTOR signaling pathways. The upstream regulatory network revealed that AKT1 and MAPK14 as important PKs and HIF1A and SP1 as important TFs associated with AKT1, IL-10, and TNF. The molecular connections identified between COVID-19 and NAFLD may shed light on discovering the causes of the severity of SARS-CoV-2 infected NAFLD patients.
引用
收藏
页码:609 / 619
页数:11
相关论文
共 55 条
[1]   The role of cytokine profile and lymphocyte subsets in the severity of coronavirus disease 2019 (COVID-19): A systematic review and meta-analysis [J].
Akbari, Hamed ;
Tabrizi, Reza ;
Lankarani, Kamran B. ;
Aria, Hamid ;
Vakili, Sina ;
Asadian, Fatemeh ;
Noroozi, Saam ;
Keshavarz, Pedram ;
Faramarz, Sanaz .
LIFE SCIENCES, 2020, 258
[2]   SARS-CoV-2, ACE2 expression, and systemic organ invasion [J].
Ashraf, Usman M. ;
Abokor, Ahmed A. ;
Edwards, Jonnelle M. ;
Waigi, Emily W. ;
Royfman, Rachel S. ;
Hasan, Syed Abdul-Moiz ;
Smedlund, Kathryn B. ;
Hardy, Ana Maria Gregio ;
Chakravarti, Ritu ;
Koch, Lauren Gerard .
PHYSIOLOGICAL GENOMICS, 2021, 53 (02) :51-60
[3]   COVID-19 and comorbidities: A role for dipeptidyl peptidase 4 (DPP4) in disease severity? [J].
Bassendine, Margaret F. ;
Bridge, Simon H. ;
McCaughan, Geoffrey W. ;
Gorrell, Mark D. .
JOURNAL OF DIABETES, 2020, 12 (09) :649-658
[4]   Targeting TMPRSS2 in SARS-CoV-2 Infection [J].
Baughn, Linda B. ;
Sharma, Neeraj ;
Elhaik, Eran ;
Sekulic, Aleksandar ;
Bryce, Alan H. ;
Fonseca, Rafael .
MAYO CLINIC PROCEEDINGS, 2020, 95 (09) :1989-1999
[5]  
Bramante Carolyn T, 2020, medRxiv, DOI 10.1101/2020.09.01.20185850
[6]   miR-34a/SIRT1/p53 is suppressed by ursodeoxycholic acid in the rat liver and activated by disease severity in human non-alcoholic fatty liver disease [J].
Castro, Rui E. ;
Ferreira, Duarte M. S. ;
Afonso, Marta B. ;
Borralho, Pedro M. ;
Machado, Mariana V. ;
Cortez-Pinto, Helena ;
Rodrigues, Cecilia M. P. .
JOURNAL OF HEPATOLOGY, 2013, 58 (01) :119-125
[7]   Deregulated miRNA expression is associated with endothelial dysfunction in post-mortem lung biopsies of COVID-19 patients [J].
Centa, Ariana ;
Fonseca, Aline S. ;
da Silva Ferreira, Solange G. ;
Azevedo, Marina Luise, V ;
de Paula, Caroline B. Vaz ;
Nagashima, Seigo ;
Machado-Souza, Cleber ;
dos Santos Miggiolaro, Anna Flavia R. ;
Baena, Cristina P. ;
de Noronha, Lucia ;
Cavalli, Luciane R. .
AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY, 2021, 320 (03) :L405-L412
[8]   Reduction and Functional Exhaustion of T Cells in Patients With Coronavirus Disease 2019 (COVID-19) [J].
Diao, Bo ;
Wang, Chenhui ;
Tan, Yingjun ;
Chen, Xiewan ;
Liu, Ying ;
Ning, Lifen ;
Chen, Li ;
Li, Min ;
Liu, Yueping ;
Wang, Gang ;
Yuan, Zilin ;
Feng, Zeqing ;
Zhang, Yi ;
Wu, Yuzhang ;
Chen, Yongwen .
FRONTIERS IN IMMUNOLOGY, 2020, 11
[9]   Effect of miR-34a in regulating steatosis by targeting PPARα expression in nonalcoholic fatty liver disease [J].
Ding, Jiexia ;
Li, Meng ;
Wan, Xingyong ;
Jin, Xi ;
Chen, Shaohua ;
Yu, Chaohui ;
Li, Youming .
SCIENTIFIC REPORTS, 2015, 5
[10]   Acute and post-acute phase of COVID-19: Analyzing expression patterns of miRNA-29a-3p, 146a-3p, 155-5p, and let-7b-3p in PBMC [J].
Donyavi, Tahereh ;
Bokharaei-Salim, Farah ;
Baghi, Hossein Bannazadeh ;
Khanaliha, Khadijeh ;
Janat-Makan, Mahrokh Alaei ;
Karimi, Bahareh ;
Nahand, Javid Sadri ;
Mirzaei, Hamed ;
Khatami, AliReza ;
Garshasbi, Saba ;
Khoshmirsafa, Majid ;
Kiani, Seyed Jalal .
INTERNATIONAL IMMUNOPHARMACOLOGY, 2021, 97