A Multimodality Machine Learning Approach to Differentiate Severe and Nonsevere COVID-19: Model Development and Validation

被引:30
作者
Chen, Yuanfang [1 ,2 ]
Ouyang, Liu [3 ]
Bao, Forrest S. [4 ]
Li, Qian [5 ]
Han, Lei [1 ,6 ]
Zhang, Hengdong [1 ,6 ]
Zhu, Baoli [1 ,6 ,7 ]
Ge, Yaorong [8 ]
Robinson, Patrick [9 ]
Xu, Ming [1 ,6 ,9 ]
Liu, Jie [10 ]
Chen, Shi [9 ,11 ]
机构
[1] Publ Hlth Res Inst Jiangsu Prov, Nanjing, Peoples R China
[2] Jiangsu Prov Ctr Dis Control & Prevent, Inst HIV AIDS STI Prevent & Control, Nanjing, Peoples R China
[3] Huazhong Univ Sci & Technol, Union Hosp, Dept Orthopaed, Wuhan, Peoples R China
[4] Iowa State Univ, Dept Comp Sci, Ames, IA USA
[5] Jiangsu Univ, Affiliated Kunshan Hosp, Dept Pediat, Kunshan, Peoples R China
[6] Jiangsu Prov Ctr Dis Control & Prevent, Dept Occupat Dis Prevent, 172 Jiangsu Rd, Nanjing 210009, Peoples R China
[7] Nanjing Med Univ, Sch Publ Hlth, Nanjing, Peoples R China
[8] Univ N Carolina, Dept Software & Informat Syst, Charlotte, NC USA
[9] Univ N Carolina, Dept Publ Hlth Sci, Charlotte, NC USA
[10] Huazhong Univ Sci & Technol, Union Hosp, Dept Radiol, Wuhan, Peoples R China
[11] Univ N Carolina, Sch Data Sci, Charlotte, NC USA
基金
美国国家科学基金会;
关键词
COVID-19; clinical type; multimodality; classification; machine learning; diagnosis; prediction; reliable; decision support;
D O I
10.2196/23948
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
Background: Effectively and efficiently diagnosing patients who have COVID-19 with the accurate clinical type of the disease is essential to achieve optimal outcomes for the patients as well as to reduce the risk of overloading the health care system. Currently, severe and nonsevere COVID-19 types are differentiated by only a few features, which do not comprehensively characterize the complicated pathological, physiological, and immunological responses to SARS-CoV-2 infection in the different disease types. In addition, these type-defining features may not be readily testable at the time of diagnosis. Objective: In this study, we aimed to use a machine learning approach to understand COVID-19 more comprehensively, accurately differentiate severe and nonsevere COVID-19 clinical types based on multiple medical features, and provide reliable predictions of the clinical type of the disease. Methods: For this study, we recruited 214 confirmed patients with nonsevere COVID-19 and 148 patients with severe COVID-19. The clinical characteristics (26 features) and laboratory test results (26 features) upon admission were acquired as two input modalities. Exploratory analyses demonstrated that these features differed substantially between two clinical types. Machine learning random forest models based on all the features in each modality as well as on the top 5 features in each modality combined were developed and validated to differentiate COVID-19 clinical types. Results: Using clinical and laboratory results independently as input, the random forest models achieved >90% and >95% predictive accuracy, respectively. The importance scores of the input features were further evaluated, and the top 5 features from each modality were identified (age, hypertension, cardiovascular disease, gender, and diabetes for the clinical features modality, and dimerized plasmin fragment D, high sensitivity troponin I, absolute neutrophil count, interleukin 6, and lactate dehydrogenase for the laboratory testing modality, in descending order). Using these top 10 multimodal features as the only input instead of all 52 features combined, the random forest model was able to achieve 97% predictive accuracy. Conclusions: Our findings shed light on how the human body reacts to SARS-CoV-2 infection as a unit and provide insights on effectively evaluating the disease severity of patients with COVID-19 based on more common medical features when gold standard features are not available. We suggest that clinical information can be used as an initial screening tool for self-evaluation and triage, while laboratory test results should be applied when accuracy is the priority.
引用
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页数:14
相关论文
共 46 条
[1]  
[Anonymous], 2020, Novel coronavirus pneumonia diagnosis and treatment plan (provisional 7th edition), V5th
[2]  
[Anonymous], 2021, Weekly epidemiological update on COVID-19 world health organization weekly epidemiological update on COVID-19
[3]  
[Anonymous], SYMPTOMS CORONAVIRUS
[4]  
Bao F, TRIAGING MODERATE CO
[5]   Targeting potential drivers of COVID-19: Neutrophil extracellular traps [J].
Barnes, Betsy J. ;
Adrover, Jose M. ;
Baxter-Stoltzfus, Amelia ;
Borczuk, Alain ;
Cools-Lartigue, Jonathan ;
Crawford, James M. ;
Dassler-Plenker, Juliane ;
Guerci, Philippe ;
Huynh, Caroline ;
Knight, Jason S. ;
Loda, Massimo ;
Looney, Mark R. ;
McAllister, Florencia ;
Rayes, Roni ;
Renaud, Stephane ;
Rousseau, Simon ;
Salvatore, Steven ;
Schwartz, Robert E. ;
Spicer, Jonathan D. ;
Yost, Christian C. ;
Weber, Andrew ;
Zuo, Yu ;
Egeblad, Mikala .
JOURNAL OF EXPERIMENTAL MEDICINE, 2020, 217 (06)
[6]   The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2 [J].
Chen, Liang ;
Li, Xiangjie ;
Chen, Mingquan ;
Feng, Yi ;
Xiong, Chenglong .
CARDIOVASCULAR RESEARCH, 2020, 116 (06) :1097-1100
[7]   Fangcang shelter hospitals: a novel concept for responding to public health emergencies [J].
Chen, Simiao ;
Zhang, Zongjiu ;
Yang, Juntao ;
Wang, Jian ;
Zhai, Xiaohui ;
Barnighausen, Till ;
Wang, Chen .
LANCET, 2020, 395 (10232) :1305-1314
[8]   High Prevalence of Concurrent Gastrointestinal Manifestations in Patients With Severe Acute Respiratory Syndrome Coronavirus 2: Early Experience From California [J].
Cholankeril, George ;
Podboy, Alexander ;
Aivaliotis, Vasiliki Irene ;
Tarlow, Branden ;
Pham, Edward A. ;
Spencer, Sean P. ;
Kim, Donghee ;
Hsing, Ann ;
Ahmed, Aijaz .
GASTROENTEROLOGY, 2020, 159 (02) :775-777
[9]  
Feng ZJ, 2020, CHINA CDC WEEKLY, V2, P113, DOI [10.3760/cma.j.issn.0254-6450.2020.02.003, 10.46234/ccdcw2020.032]
[10]   Asymptomatic Transmission, the Achilles' Heel of Current Strategies to Control Covid-19 [J].
Gandhi, Monica ;
Yokoe, Deborah S. ;
Havlir, Diane V. .
NEW ENGLAND JOURNAL OF MEDICINE, 2020, 382 (22) :2158-2160