Genome-wide identification and expression analysis of aquaporin gene family related to abiotic stress in watermelon

被引:23
|
作者
Zhou, Yong [1 ]
Tao, Junjie [1 ,2 ]
Ahammed, Golam Jalal [3 ]
Li, Jingwen [1 ,2 ]
Yang, Youxin [1 ,2 ]
机构
[1] Jiangxi Agr Univ, Minist Educ, Key Lab Crop Physiol Ecol & Genet Breeding, Nanchang 330045, Jiangxi, Peoples R China
[2] Jiangxi Agr Univ, Coll Agron, Dept Hort, Nanchang 330045, Jiangxi, Peoples R China
[3] Henan Univ Sci & Technol, Coll Forestry, Luoyang 471023, Peoples R China
基金
中国国家自然科学基金;
关键词
watermelon; aquaporin (AQP); gene structure; expression profile; abiotic stress; MAJOR INTRINSIC PROTEINS; PLASMA-MEMBRANE AQUAPORIN; ARABIDOPSIS; TOLERANCE; PLANTS; OVEREXPRESSION; RESPONSES; DROUGHT; SILICON; BORON;
D O I
10.1139/gen-2019-0061
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The plant aquaporins (AQPs) are highly conserved integral membrane proteins that participate in multiple developmental processes and responses to various stresses. In this study, a total of 35 AQP genes were identified in the watermelon genome. The phylogenetic analysis showed that these AQPs can be divided into five types, including 16 plasma membrane intrinsic proteins (PIPs), eight tonoplast intrinsic proteins (TIPs), eight nodulin 26-like intrinsic proteins (NIPs), two small basic intrinsic proteins (SIPs), and one uncategorized X intrinsic protein (XIP). A number of cis-elements related to plant responses to hormones and stresses were detected in the promoter sequences of ClAQP genes. Chromosome distribution analysis revealed that the genes are unevenly distributed on eight chromosomes, with chromosomes 1 and 4 possessing the most genes. Expression analysis at different developmental stages in flesh and rind indicated that most of ClAQPs have tissue-specific expression. Meanwhile, some other AQP genes showed differential expression in response to cold, salt, and ABA treatments, which is consistent with the organization of the stress-responsive cis-elements detected in the promoter regions. Our results lay a foundation for understanding the specific functions of ClAQP genes to help the genetic improvement of watermelon.
引用
收藏
页码:643 / 656
页数:14
相关论文
共 50 条
  • [41] Genome-Wide Identification of NDPK Family Genes and Expression Analysis under Abiotic Stress in Brassica napus
    Wang, Long
    Zhao, Zhi
    Li, Huaxin
    Pei, Damei
    Huang, Zhen
    Wang, Hongyan
    Xiao, Lu
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (12)
  • [42] Genome-wide identification and characterization of UGT family in pigeonpea (Cajanus cajan) and expression analysis in abiotic stress
    Zhihua Song
    Lili Niu
    Qing Yang
    Biying Dong
    Litao Wang
    Mingzhu Dong
    Xiaohong Fan
    Yue Jian
    Dong Meng
    Yujie Fu
    Trees, 2019, 33 : 987 - 1002
  • [43] Genome-Wide Identification, Expression and Stress Analysis of the GRAS Gene Family in Phoebe bournei
    Chang, Jiarui
    Fan, Dunjin
    Lan, Shuoxian
    Cheng, Shengze
    Chen, Shipin
    Lin, Yuling
    Cao, Shijiang
    PLANTS-BASEL, 2023, 12 (10):
  • [44] Genome-wide characterization and analysis of bZIP transcription factor gene family related to abiotic stress in cassava
    Wei Hu
    Hubiao Yang
    Yan Yan
    Yunxie Wei
    Weiwei Tie
    Zehong Ding
    Jiao Zuo
    Ming Peng
    Kaimian Li
    Scientific Reports, 6
  • [45] Genome-Wide Identification and Expression Analysis of the Cucumber FKBP Gene Family in Response to Abiotic and Biotic Stresses
    Yang, Dekun
    Li, Yahui
    Zhu, Mengdi
    Cui, Rongjing
    Gao, Jiong
    Shu, Yingjie
    Lu, Xiaomin
    Zhang, Huijun
    Zhang, Kaijing
    GENES, 2023, 14 (11)
  • [46] Genome-Wide Identification and Expression Analysis of Eggplant DIR Gene Family in Response to Biotic and Abiotic Stresses
    Zhang, Kaijing
    Xing, Wujun
    Sheng, Suao
    Yang, Dekun
    Zhen, Fengxian
    Jiang, Haikun
    Yan, Congsheng
    Jia, Li
    HORTICULTURAE, 2022, 8 (08)
  • [47] Genome-wide identification of WRKY gene family and expression analysis under abiotic stresses in Andrographis paniculata
    Wang, Qichao
    Zeng, Wujing
    Ali, Basharat
    Zhang, Xuemin
    Xu, Ling
    Liang, Zongsuo
    BIOCELL, 2021, 45 (04) : 1107 - 1119
  • [48] Genome-wide characterization and analysis of bZIP transcription factor gene family related to abiotic stress in cassava
    Hu, Wei
    Yang, Hubiao
    Yan, Yan
    Wei, Yunxie
    Tie, Weiwei
    Ding, Zehong
    Zuo, Jiao
    Peng, Ming
    Li, Kaimian
    SCIENTIFIC REPORTS, 2016, 6
  • [49] Genome-wide identification of NAC gene family and expression analysis under abiotic stresses in Salvia miltiorrhiza
    Li, Xin
    Pan, Jianmin
    Islam, Faisal
    Li, Juanjuan
    Hou, Zhuoni
    Yang, Zongqi
    Xu, Ling
    BIOCELL, 2022, 46 (08) : 1947 - 1958
  • [50] Genome-Wide Identification of NAC Gene Family and Expression Analysis under Abiotic Stresses in Avena sativa
    Ling, Lei
    Li, Mingjing
    Chen, Naiyu
    Xie, Xinying
    Han, Zihui
    Ren, Guoling
    Yin, Yajie
    Jiang, Huixin
    GENES, 2023, 14 (06)