Characterization of the complete mitochondrial genome of Amphioplus laevis ( Ophiuroidea, Amphiuridae) with phylogenetic analysis

被引:1
作者
Xu, Qin-Zeng [1 ,2 ]
Li, Yi-Xuan [1 ]
Dong, Yue [1 ]
机构
[1] Minist Nat Resources, Inst Oceanog 1, Key Lab Sci & Engn Marine Ecol & Environm, 6 Xianxialing Rd, Qingdao 266061, Shandong, Peoples R China
[2] Qingdao Natl Lab Marine Sci & Technol, Pilot Natl Lab Marine Sci & Technol, Qingdao, Shandong, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期
关键词
mitochondrial genome; Ophiuroid; phylogeny; ALGORITHM;
D O I
10.1080/23802359.2019.1667907
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete mitochondrial genome of Amphioplus laevis was 16,084 bp in length ( Genbank accession: MN276320). It contained 13 protein- coding genes, 2 ribosomal RNA and 22 transfer RNA. The GC contents of A. laevis was 37.59%. The gene order was similar with species in the same family. Phylogenetic relationships within known ophiuroids reconstructed by 13 protein- coding mitochondrial genes, which showed that it was mostly related to Amphiopholis squamata, corresponding to the gene order. These results could provide a novel insight to the phylogeny of Ophiuroidea.
引用
收藏
页码:3062 / 3063
页数:2
相关论文
共 8 条
  • [1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [2] Conservation of mitochondrial genome arrangements in brittle stars (Echinodermata, Ophiuroidea)
    Galaska, Matthew P.
    Li, Yuanning
    Kocot, Kevin M.
    Mahon, Andrew R.
    Halanych, Kenneth M.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2019, 130 : 115 - 120
  • [3] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach
    Hahn, Christoph
    Bachmann, Lutz
    Chevreux, Bastien
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (13) : e129
  • [4] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
    Lam-Tung Nguyen
    Schmidt, Heiko A.
    von Haeseler, Arndt
    Bui Quang Minh
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) : 268 - 274
  • [5] Langmead B, 2012, NAT METHODS, V9, P357, DOI [10.1038/NMETH.1923, 10.1038/nmeth.1923]
  • [6] The impact of mitochondrial genome analyses on the understanding of deuterostome phylogeny
    Perseke, Marleen
    Golombek, Anja
    Schlegel, Martin
    Struck, Torsten H.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 66 (03) : 898 - 905
  • [7] PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data
    Ruby, J. Graham
    Bellare, Priya
    DeRisi, Joseph L.
    [J]. G3-GENES GENOMES GENETICS, 2013, 3 (05): : 865 - 880
  • [8] Wick Ryan R, 2015, Bioinformatics, V31, P3350, DOI 10.1093/bioinformatics/btv383