A Structural Landscape of Neutralizing Antibodies Against SARS-CoV-2 Receptor Binding Domain

被引:52
作者
Niu, Ling [1 ]
Wittrock, Kathryn N. [1 ]
Clabaugh, Gage C. [1 ]
Srivastava, Vikram [1 ]
Cho, Michael W. [1 ,2 ]
机构
[1] Iowa State Univ, Dept Biomed Sci, Coll Vet Med, Ames, IA 50011 USA
[2] NeoVaxSyn Inc, Ames, IA 50014 USA
关键词
SARS-CoV-2; RBD; COVID-19; neutralizing antibody; neutralizing epitope; MUTATIONS;
D O I
10.3389/fimmu.2021.647934
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
SARS-CoV-2, the novel coronavirus responsible for the ongoing COVID-19 pandemic, has been spreading rampantly. The global scientific community has responded rapidly to understand immune correlates of protection to develop vaccines and immunotherapeutics against the virus. The major goal of this mini review is to summarize current understanding of the structural landscape of neutralizing antibodies (nAbs) that target the receptor binding domain (RBD) of viral spike (S) glycoprotein. The RBD plays a critical role in the very first step of the virus life cycle. Better understanding of where and how nAbs bind the RBD should enable identification of sites of vulnerability and facilitate better vaccine design and formulation of immunotherapeutics. Towards this goal, we compiled 38 RBD-binding nAbs with known structures. Review of these nAb structures showed that (1) nAbs can be divided into five general clusters, (2) there are distinct non-neutralizing faces on the RBD, and (3) maximum of potentially four nAbs could bind the RBD simultaneously. Since most of these nAbs were isolated from virus-infected patients, additional analyses of vaccine-induced nAbs could facilitate development of improved vaccines.
引用
收藏
页数:6
相关论文
共 37 条
[1]   Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine [J].
Baden, Lindsey R. ;
El Sahly, Hana M. ;
Essink, Brandon ;
Kotloff, Karen ;
Frey, Sharon ;
Novak, Rick ;
Diemert, David ;
Spector, Stephen A. ;
Rouphael, Nadine ;
Creech, C. Buddy ;
McGettigan, John ;
Khetan, Shishir ;
Segall, Nathan ;
Solis, Joel ;
Brosz, Adam ;
Fierro, Carlos ;
Schwartz, Howard ;
Neuzil, Kathleen ;
Corey, Larry ;
Gilbert, Peter ;
Janes, Holly ;
Follmann, Dean ;
Marovich, Mary ;
Mascola, John ;
Polakowski, Laura ;
Ledgerwood, Julie ;
Graham, Barney S. ;
Bennett, Hamilton ;
Pajon, Rolando ;
Knightly, Conor ;
Leav, Brett ;
Deng, Weiping ;
Zhou, Honghong ;
Han, Shu ;
Ivarsson, Melanie ;
Miller, Jacqueline ;
Zaks, Tal .
NEW ENGLAND JOURNAL OF MEDICINE, 2021, 384 (05) :403-416
[2]  
Barnes Christopher O, 2020, bioRxiv, DOI 10.1101/2020.08.30.273920
[3]  
Barnes CO, 2020, CELL, V182, P828, DOI [10.1016/j.cell.2020.06.025, 10.1101/2020.05.28.121533]
[4]   Potent Neutralizing Antibodies against SARS-CoV-2 Identified by High-Throughput Single-Cell Sequencing of Convalescent Patients' B Cells [J].
Cao, Yunlong ;
Su, Bin ;
Guo, Xianghua ;
Sun, Wenjie ;
Deng, Yongqiang ;
Bao, Linlin ;
Zhu, Qinyu ;
Zhang, Xu ;
Zheng, Yinghui ;
Geng, Chenyang ;
Chai, Xiaoran ;
He, Runsheng ;
Li, Xiaofeng ;
Lv, Qi ;
Zhu, Hua ;
Deng, Wei ;
Xu, Yanfeng ;
Wang, Yanjun ;
Qiao, Luxin ;
Tan, Yafang ;
Song, Liyang ;
Wang, Guopeng ;
Du, Xiaoxia ;
Gao, Ning ;
Liu, Jiangning ;
Xiao, Junyu ;
Su, Xiao-dong ;
Du, Zongmin ;
Feng, Yingmei ;
Qin, Chuan ;
Qin, Chengfeng ;
Jin, Ronghua ;
Xie, X. Sunney .
CELL, 2020, 182 (01) :73-+
[5]  
Clark Sarah A, 2020, bioRxiv, DOI 10.1101/2020.11.13.381533
[6]   Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK [J].
du Plessis, Louis ;
McCrone, John T. ;
Zarebski, Alexander E. ;
Hill, Verity ;
Ruis, Christopher ;
Gutierrez, Bernardo ;
Raghwani, Jayna ;
Ashworth, Jordan ;
Colquhoun, Rachel ;
Connor, Thomas R. ;
Faria, Nuno R. ;
Jackson, Ben ;
Loman, Nicholas J. ;
O'Toole, Aine ;
Nicholls, Samuel M. ;
Parag, Kris, V ;
Scher, Emily ;
Vasylyeva, Tetyana, I ;
Volz, Erik M. ;
Watts, Alexander ;
Bogoch, Isaac I. ;
Khan, Kamran ;
Aanensen, David M. ;
Kraemer, Moritz U. G. ;
Rambaut, Andrew ;
Pybus, Oliver G. .
SCIENCE, 2021, 371 (6530) :708-+
[7]   Structurally Resolved SARS-CoV-2 Antibody Shows High Efficacy in Severely Infected Hamsters and Provides a Potent Cocktail Pairing Strategy [J].
Du, Shuo ;
Cao, Yunlong ;
Zhu, Qinyu ;
Yu, Pin ;
Qi, Feifei ;
Wang, Guopeng ;
Du, Xiaoxia ;
Bao, Linlin ;
Deng, Wei ;
Zhu, Hua ;
Liu, Jiangning ;
Nie, Jianhui ;
Zheng, Yinghui ;
Liang, Haoyu ;
Liu, Ruixue ;
Gong, Shuran ;
Xu, Hua ;
Yisimayi, Ayijiang ;
Lv, Qi ;
Wang, Bo ;
He, Runsheng ;
Han, Yunlin ;
Zhao, Wenjie ;
Bai, Yali ;
Qu, Yajin ;
Gao, Xiang ;
Ji, Chenggong ;
Wang, Qisheng ;
Gao, Ning ;
Huang, Weijin ;
Wang, Youchun ;
Xie, X. Sunney ;
Su, Xiao-dong ;
Xiao, Junyu ;
Qin, Chuan .
CELL, 2020, 183 (04) :1013-+
[8]   Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies [J].
Greaney, Allison J. ;
Loes, Andrea N. ;
Crawford, Katharine H. D. ;
Starr, Tyler N. ;
Malone, Keara D. ;
Chu, Helen Y. ;
Bloom, Jesse D. .
CELL HOST & MICROBE, 2021, 29 (03) :463-+
[9]   Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail [J].
Hansen, Johanna ;
Baum, Alina ;
Pascal, Kristen E. ;
Russo, Vincenzo ;
Giordano, Stephanie ;
Wloga, Elzbieta ;
Fulton, Benjamin O. ;
Yan, Ying ;
Koon, Katrina ;
Patel, Krunal ;
Chung, Kyung Min ;
Hermann, Aynur ;
Ullman, Erica ;
Cruz, Jonathan ;
Rafique, Ashique ;
Huang, Tammy ;
Fairhurst, Jeanette ;
Libertiny, Christen ;
Malbec, Marine ;
Lee, Wen-yi ;
Welsh, Richard ;
Farr, Glen ;
Pennington, Seth ;
Deshpande, Dipali ;
Cheng, Jemmie ;
Watty, Anke ;
Bouffard, Pascal ;
Babb, Robert ;
Levenkova, Natasha ;
Chen, Calvin ;
Zhang, Bojie ;
Hernandez, Annabel Romero ;
Saotome, Kei ;
Zhou, Yi ;
Franklin, Matthew ;
Sivapalasingam, Sumathi ;
Lye, David Chien ;
Weston, Stuart ;
Logue, James ;
Haupt, Robert ;
Frieman, Matthew ;
Chen, Gang ;
Olson, William ;
Murphy, Andrew J. ;
Stahl, Neil ;
Yancopoulos, George D. ;
Kyratsous, Christos A. .
SCIENCE, 2020, 369 (6506) :1010-+
[10]  
Huo JD, 2020, CELL HOST MICROBE, V28, P445, DOI [10.1016/j.chom.2020.06.010, 10.1016/j.chom.2020.07.002]