Lucy 2: an interactive DNA sequence quality trimming and vector removal tool

被引:105
作者
Li, S
Chou, HH [1 ]
机构
[1] Iowa State Univ, Dept Comp Sci, Ames, IA 50011 USA
[2] Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA
关键词
D O I
10.1093/bioinformatics/bth302
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Lucy2 is a raw DNA sequence trimming and visualization tool based on the popular command-line Lucy1. Users can change parameters, trim multiple sequences and visualize the results within an integrated, easy-to-use graphical user interface. Lucy2 is designed specifically for non-programmers to use, and is currently available on Windows, Linux and MacOS X. Source code is also available for porting to the other platforms.
引用
收藏
页码:2865 / 2866
页数:2
相关论文
共 5 条
[1]   DNA sequence quality trimming and vector removal [J].
Chou, HH ;
Holmes, MH .
BIOINFORMATICS, 2001, 17 (12) :1093-1104
[2]   DNA sequence-based "Bar codes" for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources [J].
Qiu, F ;
Guo, L ;
Wen, TJ ;
Liu, F ;
Ashlock, DA ;
Schnable, PS .
PLANT PHYSIOLOGY, 2003, 133 (02) :475-481
[3]   A novel algorithm for computational identification of contaminated EST libraries [J].
Sorek, R ;
Safer, HM .
NUCLEIC ACIDS RESEARCH, 2003, 31 (03) :1067-1074
[4]   Massive parallelism, randomness and genomic advances [J].
Venter, JC ;
Levy, S ;
Stockwell, T ;
Remington, K ;
Halpern, A .
NATURE GENETICS, 2003, 33 (Suppl 3) :219-227
[5]   Complete sequence and characterization of the channel catfish mitochondrial genome [J].
Waldbieser, GC ;
Bilodeau, AL ;
Nonneman, DJ .
DNA SEQUENCE, 2003, 14 (04) :265-277