The complete chloroplast genome sequence and phylogenetic analysis of the medicinal plant Lysimachia hemsleyana

被引：8

作者：

Ying, Zhiqi ^{[1
]}

Wang, Qirui ^{[1
]}

Yu, Shuisheng ^{[2
]}

Liao, Guanghui ^{[1
]}

Ge, Yuqing ^{[3
]}

Cheng, Rubin ^{[1
]}

机构：

[1] Zhejiang Chinese Med Univ, Coll Pharmaceut Sci, 548 Binwen Rd, Hangzhou, Zhejiang, Peoples R China

[2] Jiulongshan Natl Nat Reserve, Adm Bur Zhejiang, Suichang, Peoples R China

[3] Chinese Med Univ, Affiliated Hosp Zhejiang 1, Hangzhou, Zhejiang, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

关键词：

Lysimachia hemsleyana; chloroplast genome; phylogenetic analysis; medicinal plant;

D O I：

10.1080/23802359.2019.1688115

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Lysimachia hemsleyana Maxim. is an important medical plant in the Family Primulaceae. In this study, we determined the complete chloroplast genome of L. hemsleyana. It is 155,618 bp in length, containing a large single copy (LSC) region of 85,615 bp, a small single copy (SSC) region of 17,861 bp, which were separated by a pair of inverted repeat (IR) regions of 26,071bp. The complete chloroplast genome of L. hemsleyana encoded a total of 134 genes, including 89 protein-coding genes with the pseudogene of ycf1, 8 ribosomal RNA genes and 37 transfer RNA genes. Phylogenetic analysis revealed that L. hemsleyana was most closely related to the Korea endemic plant Lysimachia coreana with high bootstrap support value. This work provides basic molecular information that would be useful for further investigation on conservation genetics and evolutionary relationships of L. hemsleyana.

引用

页码：3878 / 3879

页数：2

共 8 条

[1] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[2]

Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]

[3] CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences [J].

Liu, Chang ;

Shi, Linchun ;

Zhu, Yingjie ;

Chen, Haimei ;

Zhang, Jianhui ;

Lin, Xiaohan ;

Guan, Xiaojun .

BMC GENOMICS, 2012, 13

[4]

Maximowicz O, 1996, FLORA CHINA, V15, P68

[5] MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization [J].

Meng, Guanliang ;

Li, Yiyuan ;

Yang, Chentao ;

Liu, Shanlin .

NUCLEIC ACIDS RESEARCH, 2019, 47 (11)

[6] Complete Chloroplast Genome Sequence and Phylogenetic Analysis of the Medicinal Plant Artemisia annua [J].

Shen, Xiaofeng ;

Wu, Mingli ;

Liao, Baosheng ;

Liu, Zhixiang ;

Bai, Rui ;

Xiao, Shuiming ;

Li, Xiwen ;

Zhang, Boli ;

Xu, Jiang ;

Chen, Shilin .

MOLECULES, 2017, 22 (08)

[7] Complete chloroplast genome sequence of Lysimachia coreana (Primulaceae) [J].

Son, OGyeong ;

Park, Seon Joo .

MITOCHONDRIAL DNA PART A, 2016, 27 (03) :2263-2265

[8]

Zhang Lanling, 2002, Zhong Yao Cai, V25, P888

← 1 →