UNRAVELING THE BIOACTIVITY OF ANTICANCER PEPTIDES AS DEDUCED FROM MACHINE LEARNING

被引:96
作者
Shoombuatong, Watshara [1 ]
Schaduangrat, Nalini [1 ]
Nantasenamat, Chanin [1 ]
机构
[1] Mahidol Univ, Fac Med Technol, Ctr Data Min & Biomed Informat, Bangkok 10700, Thailand
来源
EXCLI JOURNAL | 2018年 / 17卷
关键词
cancer; anticancer; antitumor; anticancer peptides; host defense peptides; bioactivity; machine learning; QSAR; VIVO HALF-LIFE; HOST-DEFENSE PEPTIDES; IN-VITRO ACTIVITY; ANTIMICROBIAL PEPTIDES; SYSTEMIC INOCULATION; IMMUNE-RESPONSES; TUMOR-GROWTH; WEB SERVER; QSAR; DATABASE;
D O I
10.17179/excli2018-1447
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cancer imposes a global health burden as it represents one of the leading causes of morbidity and mortality while also giving rise to significant economic burden owing to the associated expenditures for its monitoring and treatment. In spite of advancements in cancer therapy, the low success rate and recurrence of tumor has necessitated the ongoing search for new therapeutic agents. Aside from drugs based on small molecules and protein-based biopharmaceuticals, there has been an intense effort geared towards the development of peptide-based therapeutics owing to its favorable and intrinsic properties of being relatively small, highly selective, potent, safe and low in production costs. In spite of these advantages, there are several inherent weaknesses that are in need of attention in the design and development of therapeutic peptides. An abundance of data on bioactive and therapeutic peptides have been accumulated over the years and the burgeoning area of artificial intelligence has set the stage for the lucrative utilization of machine learning to make sense of these large and high-dimensional data. This review summarizes the current state-of-the-art on the application of machine learning for studying the bioactivity of anticancer peptides along with future outlook of the field.
引用
收藏
页码:734 / 752
页数:19
相关论文
共 104 条
[1]   iACP-GAEnsC: Evolutionary genetic algorithm based ensemble classification of anticancer peptides by utilizing hybrid feature space [J].
Akbar, Shahid ;
Hayat, Maqsood ;
Iqbal, Muhammad ;
Jan, Mian Ahmad .
ARTIFICIAL INTELLIGENCE IN MEDICINE, 2017, 79 :62-70
[2]   Oncolytic Activities of Host Defense Peptides [J].
Al-Benna, Sammy ;
Shai, Yechiel ;
Jacobsen, Frank ;
Steinstraesser, Lars .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2011, 12 (11) :8027-8051
[3]   QSAR and docking studies on xanthone derivatives for anticancer activity targeting DNA topoisomerase IIα [J].
Alam, Sarfaraz ;
Khan, Feroz .
DRUG DESIGN DEVELOPMENT AND THERAPY, 2014, 8 :183-195
[4]  
[Anonymous], 2006, PATTERN RECOGN
[5]   Recent trends in incidence of five common cancers in 26 European countries since 1988: Analysis of the European Cancer Observatory [J].
Arnold, Melina ;
Karim-Kos, Henrike E. ;
Coebergh, Jan Willem ;
Byrnes, Graham ;
Antilla, Ahti ;
Ferlay, Jacques ;
Renehan, Andrew G. ;
Forman, David ;
Soerjomataram, Isabelle .
EUROPEAN JOURNAL OF CANCER, 2015, 51 (09) :1164-1187
[6]   Gravitational search algorithm: A new feature selection method for QSAR study of anticancer potency of imidazo[4,5-b]pyridine derivatives [J].
Bababdani, Behnam Mohseni ;
Mousavi, Mehdi .
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 2013, 122 :1-11
[7]   Therapeutic vaccination against a murine lymphoma by intratumoral injection of a cationic anticancer peptide [J].
Berge, Gerd ;
Eliassen, Liv Tone ;
Camilio, Ketil Andre ;
Bartnes, Kristian ;
Sveinbjornsson, Baldur ;
Rekdal, Oystein .
CANCER IMMUNOLOGY IMMUNOTHERAPY, 2010, 59 (08) :1285-1294
[8]   In vitro activity and potency of an intravenously injected antimicrobial peptide and its DL amino acid analog in mice infected with bacteria [J].
Braunstein, A ;
Papo, N ;
Shai, Y .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2004, 48 (08) :3127-3129
[9]   Complete regression and systemic protective immune responses obtained in B16 melanomas after treatment with LTX-315 [J].
Camilio, Ketil Andre ;
Berge, Gerd ;
Ravuri, Chandra Sekhar ;
Rekdal, Oystein ;
Sveinbjornsson, Baldur .
CANCER IMMUNOLOGY IMMUNOTHERAPY, 2014, 63 (06) :601-613
[10]   IACP: a sequence-based tool for identifying anticancer peptides [J].
Chen, Wei ;
Ding, Hui ;
Feng, Pengmian ;
Lin, Hao ;
Chou, Kuo-Chen .
ONCOTARGET, 2016, 7 (13) :16895-16909