Functional Neuroimaging in the New Era of Big Data

被引:30
作者
Li, Xiang [1 ]
Guo, Ning [1 ]
Li, Quanzheng [1 ]
机构
[1] Massachusetts Gen Hosp, Boston, MA 02114 USA
基金
美国国家卫生研究院;
关键词
Big data; Neuroimaging; Machine learning; Health informatics; fMRI; DISTRIBUTED COMPUTING PLATFORM; HUMAN BRAIN; FMRI; NETWORKS; NEUROSCIENCE; CONNECTOME; CHALLENGES; SCALE; CLASSIFICATION; REPRESENTATION;
D O I
10.1016/j.gpb.2018.11.005
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The field of functional neuroimaging has substantially advanced as a big data science in the past decade, thanks to international collaborative projects and community efforts. Here we conducted a literature review on functional neuroimaging, with focus on three general challenges in big data tasks: data collection and sharing, data infrastructure construction, and data analysis methods. The review covers a wide range of literature types including perspectives, database descriptions, methodology developments, and technical details. We show how each of the challenges was proposed and addressed, and how these solutions formed the three core foundations for the functional neuroimaging as a big data science and helped to build the current data-rich and data-driven community. Furthermore, based on our review of recent literature on the upcoming challenges and opportunities toward future scientific discoveries, we envisioned that the functional neuroimaging community needs to advance from the current foundations to better data integration infrastructure, methodology development toward improved learning capability, and multi-discipline translational research framework for this new era of big data.
引用
收藏
页码:393 / 401
页数:9
相关论文
共 133 条
[1]   Discriminating cognitive status in Parkinson's disease through functional connectomics and machine learning [J].
Abos, Alexandra ;
Baggio, Hugo C. ;
Segura, Barbara ;
Garcia-Diaz, Anna I. ;
Compta, Yaroslau ;
Marti, Maria Jose ;
Valldeoriola, Francesc ;
Junque, Carme .
SCIENTIFIC REPORTS, 2017, 7
[2]   Challenges and Opportunities in Mining Neuroscience Data [J].
Akil, Huda ;
Martone, Maryann E. ;
Van Essen, David C. .
SCIENCE, 2011, 331 (6018) :708-712
[3]   An open resource for transdiagnostic research in pediatric mental health and learning disorders [J].
Alexander, Lindsay M. ;
Escalera, Jasmine ;
Ai, Lei ;
Andreotti, Charissa ;
Febre, Karina ;
Mangone, Alexander ;
Vega-Potler, Natan ;
Langer, Nicolas ;
Alexander, Alexis ;
Kovacs, Meagan ;
Litke, Shannon ;
O'Hagan, Bridget ;
Andersen, Jennifer ;
Bronstein, Batya ;
Bui, Anastasia ;
Bushey, Marijayne ;
Butler, Henry ;
Castagna, Victoria ;
Camacho, Nicolas ;
Chan, Elisha ;
Citera, Danielle ;
Clucas, Jon ;
Cohen, Samantha ;
Dufek, Sarah ;
Eaves, Megan ;
Fradera, Brian ;
Gardner, Judith ;
Grant-Villegas, Natalie ;
Green, Gabriella ;
Gregory, Camille ;
Hart, Emily ;
Harris, Shana ;
Horton, Megan ;
Kahn, Danielle ;
Kabotyanski, Katherine ;
Karmel, Bernard ;
Kelly, Simon P. ;
Kleinman, Kayla ;
Koo, Bonhwang ;
Kramer, Eliza ;
Lennon, Elizabeth ;
Lord, Catherine ;
Mantello, Ginny ;
Margolis, Amy ;
Merikangas, Kathleen R. ;
Milham, Judith ;
Minniti, Giuseppe ;
Neuhaus, Rebecca ;
Levine, Alexandra ;
Osman, Yael .
SCIENTIFIC DATA, 2017, 4
[4]   The Northwestern University Neuroimaging Data Archive (NUNDA) [J].
Alpert, Kathryn ;
Kogan, Alexandr ;
Parrish, Todd ;
Marcus, Daniel ;
Wang, Lei .
NEUROIMAGE, 2016, 124 :1131-1136
[5]   The Human Brain Project: Creating a European Research Infrastructure to Decode the Human Brain [J].
Amunts, Katrin ;
Ebell, Christoph ;
Muller, Jeff ;
Telefont, Martin ;
Knoll, Alois ;
Lippert, Thomas .
NEURON, 2016, 92 (03) :574-581
[6]  
[Anonymous], 2015, Brain Inform, DOI DOI 10.1007/S40708-015-0024-0
[7]   Empathic Care and Distress: Predictive Brain Markers and Dissociable Brain Systems [J].
Ashar, Yoni K. ;
Andrews-Hanna, Jessica R. ;
Dimidjian, Sona ;
Wager, Tor D. .
NEURON, 2017, 94 (06) :1263-+
[8]   LARGE SCALE COLLABORATION WITH AUTONOMY: DECENTRALIZED DATA ICA [J].
Baker, Bradley T. ;
Silva, Rogers F. ;
Calhoun, Vince D. ;
Sarwate, Anand D. ;
Plis, Sergey M. .
2015 IEEE INTERNATIONAL WORKSHOP ON MACHINE LEARNING FOR SIGNAL PROCESSING, 2015,
[9]   Response of the medial temporal lobe network in amnestic mild cognitive impairment to therapeutic intervention assessed by fMRI and memory task performance [J].
Bakker, Arnold ;
Albert, Marilyn S. ;
Krauss, Gregory ;
Speck, Caroline L. ;
Gallagher, Michela .
NEUROIMAGE-CLINICAL, 2015, 7 :688-698
[10]   Tensorial extensions of independent component analysis for multisubject FMRI analysis [J].
Beckmann, CF ;
Smith, SM .
NEUROIMAGE, 2005, 25 (01) :294-311