The future of phenotypic drug discovery

被引:28
作者
Berg, Ellen L. [1 ]
机构
[1] Eurofins Discovery, Burlingame, CA 94010 USA
关键词
SYSTEMS; MECHANISMS; THROMBOSIS; PLATFORM; MODELS; CELLS;
D O I
10.1016/j.chembiol.2021.01.010
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Phenotypic drug discovery (PDD) uses biological systems directly for new drug screening. While PDD has proved effective in the discovery of drugs with novel mechanisms, for broader adoption, key challenges need resolution: progression of poorly qualified leads and overloaded pipelines due to lack of effective tools to process and prioritize hits; and advancement of leads with undesirable mechanisms that fail at more expensive stages of discovery. Here I discuss how human-based phenotypic platforms are being applied throughout the discovery process for hit triage and prioritization, for elimination of hits with unsuitable mechanisms, and for supporting clinical strategies through pathway-based decision frameworks. Harnessing the data generated in these platforms can also fuel a deeper understanding of drug efficacy and toxicity mechanisms. As these approaches increase in use, they will gain in power for driving better decisions, generating better leads faster and in turn promoting greater adoption of PDD.
引用
收藏
页码:424 / 430
页数:7
相关论文
共 34 条
[1]   ADVERSE OUTCOME PATHWAYS: A CONCEPTUAL FRAMEWORK TO SUPPORT ECOTOXICOLOGY RESEARCH AND RISK ASSESSMENT [J].
Ankley, Gerald T. ;
Bennett, Richard S. ;
Erickson, Russell J. ;
Hoff, Dale J. ;
Hornung, Michael W. ;
Johnson, Rodney D. ;
Mount, David R. ;
Nichols, John W. ;
Russom, Christine L. ;
Schmieder, Patricia K. ;
Serrrano, Jose A. ;
Tietge, Joseph E. ;
Villeneuve, Daniel L. .
ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY, 2010, 29 (03) :730-741
[2]   Liver microphysiological systems development guidelines for safety risk assessment in the pharmaceutical industry [J].
Baudy, Andreas R. ;
Otieno, Monicah A. ;
Hewitt, Philip ;
Gan, Jinping ;
Roth, Adrian ;
Keller, Douglas ;
Sura, Radhakrishna ;
Van Vleet, Terry R. ;
Proctor, William R. .
LAB ON A CHIP, 2020, 20 (02) :215-225
[3]   Optimizing Drug Discovery by Investigative Toxicology: Current and Future Trends [J].
Beilmann, Mario ;
Boonen, Harrie ;
Czich, Andreas ;
Dear, Gordon ;
Hewitt, Philip ;
Mow, Limas ;
Newham, Peter ;
Oinonen, Tea ;
Pognan, Francois ;
Roth, Adrian ;
Valentin, Jean-Pierre ;
Van Goethem, Freddy ;
Weaver, Richard J. ;
Birk, Barbara ;
Boyer, Scott ;
Caloni, Francesca ;
Chen, Alice E. ;
Corvi, Raffaella ;
Cronin, Mark T. D. ;
Daneshian, Manias ;
Ewart, Lorna C. ;
FitzGerald, Rex E. ;
Hamilton, Geraldine A. ;
Hartung, Thomas ;
Kangas, Joshua D. ;
Kramer, Nynke L. ;
Leist, Marcel ;
Marx, Uwe ;
Polak, Sebastian ;
Rovida, Costanza ;
Testai, Emanuela ;
van de Water, Bob ;
Vulto, Paul ;
Steger-Hartmann, Thomas .
ALTEX-ALTERNATIVES TO ANIMAL EXPERIMENTATION, 2019, 36 (02) :289-313
[4]  
Berg E.L., 2020, PHENOTYPIC DRUG DISC, DOI [10.1039/9781839160721-00020, DOI 10.1039/9781839160721-00020]
[5]   Human Cell-Based in vitro Phenotypic Profiling for Drug Safety-Related Attrition [J].
Berg, Ellen L. .
FRONTIERS IN BIG DATA, 2019, 2
[6]  
Berg Ellen L, 2017, Drug Discov Today Technol, V23, P53, DOI 10.1016/j.ddtec.2017.01.001
[7]   Elucidating Mechanisms of Toxicity Using Phenotypic Data from Primary Human Cell Systems-A Chemical Biology Approach for Thrombosis-Related Side Effects [J].
Berg, Ellen L. ;
Polokoff, Mark A. ;
O'Mahony, Alison ;
Nguyen, Dat ;
Li, Xitong .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2015, 16 (01) :1008-1029
[8]   Consideration of the cellular microenvironment: Physiologically relevant co-culture systems in drug discovery [J].
Berg, Ellen L. ;
Hsu, Yu-Chih ;
Lee, Jonathan A. .
ADVANCED DRUG DELIVERY REVIEWS, 2014, 69 :190-204
[9]   Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes [J].
Bray, Mark-Anthony ;
Singh, Shantanu ;
Han, Han ;
Davis, Chadwick T. ;
Borgeson, Blake ;
Hartland, Cathy ;
Kost-Alimova, Maria ;
Gustafsdottir, Sigrun M. ;
Gibson, Christopher C. ;
Carpenter, Anne E. .
NATURE PROTOCOLS, 2016, 11 (09) :1757-1774
[10]   A brief history of organoids [J].
Corro, Claudia ;
Novellasdemunt, Laura ;
Li, Vivian S. W. .
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY, 2020, 319 (01) :C151-C165