The resolution dependence of optimal exposures in liquid nitrogen temperature electron cryomicroscopy of catalase crystals

被引:61
作者
Baker, Lindsay A. [1 ,2 ]
Smith, Eric A. [1 ]
Bueler, Stephanie A. [1 ]
Rubinstein, John L. [1 ,2 ]
机构
[1] Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada
[2] Univ Toronto, Dept Biochem, Toronto, ON M5S 1A1, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
Electron cryomicroscopy; Radiation damage; Catalase; Optimal exposure; Critical exposure; RADIATION-DAMAGE; PURPLE MEMBRANE; ATP SYNTHASE; X-RAYS; MICROSCOPY; SINGLE; BACTERIORHODOPSIN; SPECIMENS; MACROMOLECULES; DIFFRACTION;
D O I
10.1016/j.jsb.2009.11.014
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Electron beam damage is the fundamental limit to resolution in electron cryomicroscopy (cryo-EM) of frozen, hydrated specimens. Radiation damage increases with the number of electrons used to obtain an image and affects information at higher spatial frequencies before low-resolution information. For the experimentalist, a balance exists between electron exposures sufficient to obtain a useful signal-to-noise ratio (SNR) in images and exposures that limit the damage to structural features. In single particle cryo-EM this balance is particularly delicate: low-resolution features must be imaged with a sufficient SNR to allow image alignment so that high-resolution features recorded below the noise level can be recovered by averaging independent images. By measuring the fading of Fourier components from images obtained at 200 kV of thin crystals of catalase embedded in ice, we have determined the electron exposures that will maximize the SNR at resolutions between 86 and 2.9 angstrom. These data allow for a rational choice of exposure for single particle cryo-EM. For example, for 20 angstrom resolution, the SNR is maximized at similar to 20 e(-)/angstrom(2), whereas for 3 angstrom resolution, it is maximized at similar to 10 e(-)/angstrom(2). We illustrate the effects of exposure in single particle cryo-EM with data collected at similar to 12-15 and similar to 24-30 e(-)/angstrom(2). (C) 2009 Elsevier Inc. All rights reserved.
引用
收藏
页码:431 / 437
页数:7
相关论文
共 38 条
  • [1] Radiation damage effects at four specimen temperatures from 4 to 100 K
    Bammes, Benjamin E.
    Jakana, Joanita
    Schmid, Michael F.
    Chiu, Wah
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 2010, 169 (03) : 331 - 341
  • [2] Evaluation of charging on macromolecules in electron cryomicroscopy
    Brink, J
    Sherman, MB
    Berriman, J
    Chiu, W
    [J]. ULTRAMICROSCOPY, 1998, 72 (1-2) : 41 - 52
  • [3] A dose-rate effect in single-particle electron microscopy (vol 161, pg 92, 2008)
    Chen, James Z.
    Sachse, Carsten
    Xu, Chen
    Mielke, Thorsten
    Spahn, Christian M. T.
    Grigorieff, Nikolaus
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 2008, 164 (02) : 240 - 240
  • [4] A dose-rate effect in single-particle electron microscopy
    Chen, James Z.
    Sachse, Carsten
    Xu, Chen
    Mielke, Thorsten
    Spahn, Christian M. T.
    Grigorieff, Nikolaus
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 2008, 161 (01) : 92 - 100
  • [5] Dose tolerance at helium and nitrogen temperatures for whole cell electron tomography
    Comolli, LR
    Downing, KH
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 2005, 152 (03) : 149 - 156
  • [6] THE EFFECTS OF RADIATION-DAMAGE ON THE STRUCTURE OF FROZEN-HYDRATED HSV-1 CAPSIDS
    CONWAY, JF
    TRUS, BL
    BOOY, FP
    NEWCOMB, WW
    BROWN, JC
    STEVEN, AC
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 1993, 111 (03) : 222 - 233
  • [7] MRC image processing programs
    Crowther, RA
    Henderson, R
    Smith, JM
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) : 9 - 16
  • [8] ELECTRON-DIFFRACTION FROM SINGLE, FULLY-HYDRATED, OX LIVER CATALASE MICROCRYSTALS
    DORSET, DL
    PARSONS, DF
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 1975, A 31 (MAR1): : 210 - 215
  • [9] Accurate recording and measurement of electron diffraction data in structural and difference Fourier studies of proteins
    Downing, KH
    Li, HL
    [J]. MICROSCOPY AND MICROANALYSIS, 2001, 7 (05) : 407 - 417
  • [10] CRYO-ELECTRON MICROSCOPY OF VITRIFIED SPECIMENS
    DUBOCHET, J
    ADRIAN, M
    CHANG, JJ
    HOMO, JC
    LEPAULT, J
    MCDOWALL, AW
    SCHULTZ, P
    [J]. QUARTERLY REVIEWS OF BIOPHYSICS, 1988, 21 (02) : 129 - 228