The complete mitochondrial genome of Lutjanus ophuysenii and phylogenetic analysis

被引:3
作者
Sun, Peng [1 ]
Jiang, Yazhou [1 ]
Yuan, Xingwei [1 ]
Zhang, Hui [1 ]
机构
[1] Chinese Acad Fishery Sci, East China Sea Fisheries Res Inst, Key Lab East China Sea Fishery Resources Exploita, Minist Agr, Shanghai, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 08期
基金
上海市自然科学基金;
关键词
Lutjanus ophuysenii; mitochondrial genome; phylogenetic analysis; Lutjanidae;
D O I
10.1080/23802359.2021.1951140
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete mitochondrial genome of Lutjanus ophuysenii was analyzed by the next-generation sequencing. It was composed of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), 2 ribosomal RNA genes (rRNA), and a control region with a total length of 16,498 bp. This mitochondrial genome has a base composition of 27.78% A, 16.55% G, 30.68% C, and 24.98% T. The phylogenetic analysis revealed that the L. ophuysenii has the closest relationship with L. votta. This mitochondrial genome provides important information for the phylogenetic relationship and genetic resource in this species.
引用
收藏
页码:2396 / 2397
页数:2
相关论文
共 7 条
  • [1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [2] MITOS: Improved de novo metazoan mitochondrial genome annotation
    Bernt, Matthias
    Donath, Alexander
    Juehling, Frank
    Externbrink, Fabian
    Florentz, Catherine
    Fritzsch, Guido
    Puetz, Joern
    Middendorf, Martin
    Stadler, Peter F.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) : 313 - 319
  • [3] Kim Han Na, 2016, Fisheries and Aquatic Sciences, V19, P43, DOI 10.1186/s41240-016-0043-7
  • [4] Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
  • [5] Genetic difference between two snappers, Lutjanus ophuysenii and L-vitta (Teleostei: Lutjanidae)
    Lee, SC
    Cheng, HL
    [J]. ICHTHYOLOGICAL RESEARCH, 1996, 43 (03) : 340 - 344
  • [6] Nelson J., 2006, Fishes of the world, V4th, P366
  • [7] The complete mitochondrial genome of yellowfin seabream, Acanthopagrus latus (Percoiformes, Sparidae) from Beibu Bay
    Pan, Chuanyan
    Gao, Chongmin
    Chen, Tao
    Chen, Xiuli
    Yang, Chunling
    Zeng, Digang
    Feng, Pengfei
    Jiang, Weiming
    Peng, Min
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (04): : 1313 - 1314