Hydrogen bonding effect on the structure and vibrational spectra of complementary pairs of nucleic acid bases. I. Adenine-uracil

被引:9
作者
Ten, G. N. [1 ]
Nechaev, V. V. [1 ]
Pankratov, A. N. [1 ]
Baranov, V. I. [2 ]
机构
[1] NG Chernyshevskii Saratov State Univ, Saratov, Russia
[2] Russian Acad Sci, VI Vernadsky Inst Geochem & Analyt Chem, Moscow 117901, Russia
关键词
adenine; uracil; complementary pair; vibrational spectra; hydrogen bonding; interpretation; EXPERIMENTAL-MATRIX-ISOLATION; INFRARED-SPECTRA; AB-INITIO; MOLECULAR-STRUCTURE; COMPLEXES; THYMINE; PURINE; 2-CHLOROADENINE; CONSTITUENTS; TAUTOMERISM;
D O I
10.1007/s10947-010-0067-2
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
Vibrational spectra of the adenine-uracil complementary pair of nucleic acid bases (NAB) in the isolated state are calculated in the B3LYP/6-311++G(d,p) approximation and analyzed. The hydrogen bonding effect on frequency positions and intensities of normal vibrations of NAB pairs is shown in comparison with isolated uracil and adenine molecules.
引用
收藏
页码:453 / 462
页数:10
相关论文
共 41 条
[1]   NUCLEIC-ACID BASES STUDIED BY MATRIX-ISOLATION VIBRATIONAL SPECTROSCOPY - URACIL AND DEUTERATED URACILS [J].
BARNES, AJ ;
STUCKEY, MA ;
LEGALL, L .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 1984, 40 (05) :419-431
[2]   On the hydrogen bonding in uracil: its effect on the vibrational spectrum [J].
Bencivenni, L ;
Ramondo, F ;
Pieretti, A ;
Sanna, N .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 2000, (08) :1685-1693
[3]  
Bilobrov V. M., 1991, HYDROGEN BOND INTRAM
[4]   MP2 and DFT studies of the DNA rare base pairs: The molecular mechanism of the spontaneous substitution mutations conditioned by tautomerism of bases [J].
Danilov, VI ;
Anisimov, VM ;
Kurita, C ;
Hovorun, D .
CHEMICAL PHYSICS LETTERS, 2005, 412 (4-6) :285-293
[5]   PROPERTIES OF HYDROGEN-BONDED COMPLEXES OBTAINED FROM THE B3LYP FUNCTIONAL WITH 6-31G(D,P) AND 6-31+G(D,P) BASIS-SETS - COMPARISON WITH MP2/6-31+G(D,P) RESULTS AND EXPERIMENTAL-DATA [J].
DELBENE, JE ;
PERSON, WB ;
SZCZEPANIAK, K .
JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (27) :10705-10707
[6]  
[Элькин П.М. Elkin P.M.], 2006, [Журнал прикладной спектроскопии, Zhurnal prikladnoi spektroskopii], V73, P431
[7]   THE MOLECULAR-STRUCTURE OF URACIL - AN ELECTRON-DIFFRACTION STUDY [J].
FERENCZY, G ;
HARSANYI, L ;
ROZSONDAI, B ;
HARGITTAI, I .
JOURNAL OF MOLECULAR STRUCTURE, 1986, 140 (1-2) :71-77
[8]  
FLORIAN J, 1995, INT J QUANTUM CHEM, P207
[9]  
Frisch M. J., 2003, Gaussian 03
[10]  
GRIBOV LA, 1998, VARIATION METHODS SO