Circular RNA: an emerging key player in RNA world

被引:274
作者
Meng, Xianwen [1 ]
Li, Xue [1 ]
Zhang, Peijing [1 ]
Wang, Jingjing [1 ]
Zhou, Yincong [1 ]
Chen, Ming [2 ]
机构
[1] Zhejiang Univ, Ming Chens Lab, Hangzhou, Zhejiang, Peoples R China
[2] Zhejiang Univ, Dept Bioinformat, Coll Life Sci, Hangzhou, Zhejiang, Peoples R China
关键词
circular RNA; noncoding RNA; high-throughput sequencing; miRNA sponge; human disease; bioinformatics identification; EXON CIRCULARIZATION; CIRCRNA BIOGENESIS; SEQUENCING DATA; HUMAN SALIVA; LUNG-CANCER; GENE; TRANSCRIPTS; EXPRESSION; PATHWAY; MIR-7;
D O I
10.1093/bib/bbw045
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Insights into the circular RNA (circRNA) exploration have revealed that they are abundant in eukaryotic transcriptomes. Diverse genomic regions can generate different types of RNA circles, implying their diversity. Covalently closed loop structures elevate the stability of this new type of noncoding RNA. High-throughput sequencing analyses suggest that circRNAs exhibit tissue-and developmental-specific expression, indicating that they may play crucial roles in multiple cellular processes. Strikingly, several circRNAs could function as microRNA sponges and regulate gene transcription, highlighting a new class of important regulators. Here, we review the recent advances in knowledge of endogenous circRNA biogenesis, properties and functions. We further discuss the current findings about circRNAs in human diseases. In plants, the roles of circRNAs remain a mystery. Online resources and bioinformatics identification of circRNAs are essential for the analysis of circRNA biology, although different strategies yield divergent results. The understanding of circRNA functions remains limited; however, circRNAs are enriching the RNA world, acting as an emerging key player.
引用
收藏
页码:547 / 557
页数:11
相关论文
共 74 条
[1]   Rolling Circle Translation of Circular RNA in Living Human Cells [J].
Abe, Naoko ;
Matsumoto, Ken ;
Nishihara, Mizuki ;
Nakano, Yukiko ;
Shibata, Aya ;
Maruyama, Hideto ;
Shuto, Satoshi ;
Matsuda, Akira ;
Yoshida, Minoru ;
Ito, Yoshihiro ;
Abe, Hiroshi .
SCIENTIFIC REPORTS, 2015, 5
[2]   tRNA splicing [J].
Abelson, J ;
Trotta, CR ;
Li, H .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (21) :12685-12688
[3]   Circular RNA enrichment in platelets is a signature of transcriptome degradation [J].
Alhasan, Abd A. ;
Izuogu, Osagie G. ;
Al-Balool, Haya H. ;
Steyn, Jannetta S. ;
Evans, Amanda ;
Colzani, Maria ;
Ghevaert, Cedric ;
Mountford, Joanne C. ;
Marenah, Lamin ;
Elliott, David J. ;
Santibanez-Koref, Mauro ;
Jackson, Michael S. .
BLOOD, 2016, 127 (09) :E1-E11
[4]   WNT signalling pathways as therapeutic targets in cancer [J].
Anastas, Jamie N. ;
Moon, Randall T. .
NATURE REVIEWS CANCER, 2013, 13 (01) :11-26
[5]   circRNA Biogenesis Competes with Pre-mRNA Splicing [J].
Ashwal-Fluss, Reut ;
Meyer, Markus ;
Pamudurti, Nagarjuna Reddy ;
Ivanov, Andranik ;
Bartok, Osnat ;
Hanan, Mor ;
Evantal, Naveh ;
Memczak, Sebastian ;
Rajewsky, Nikolaus ;
Kadener, Sebastian .
MOLECULAR CELL, 2014, 56 (01) :55-66
[6]   Correlation of circular RNA abundance with proliferation - exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues [J].
Bachmayr-Heyda, Anna ;
Reiner, Agnes T. ;
Auer, Katharina ;
Sukhbaatar, Nyamdelger ;
Aust, Stefanie ;
Bachleitner-Hofmann, Thomas ;
Mesteri, Ildiko ;
Grunt, Thomas W. ;
Zeillinger, Robert ;
Pils, Dietmar .
SCIENTIFIC REPORTS, 2015, 5 :8057
[7]   The Landscape of MicroRNA, Piwi-Interacting RNA, and Circular RNA in Human Saliva [J].
Bahn, Jae Hoon ;
Zhang, Qing ;
Li, Feng ;
Chan, Tak-Ming ;
Lin, Xianzhi ;
Kim, Yong ;
Wong, David T. W. ;
Xiao, Xinshu .
CLINICAL CHEMISTRY, 2015, 61 (01) :221-230
[8]   miRNA sponges: soaking up miRNAs for regulation of gene expression [J].
Bak, Rasmus O. ;
Mikkelsen, Jacob Giehm .
WILEY INTERDISCIPLINARY REVIEWS-RNA, 2014, 5 (03) :317-333
[9]   Circular RNA biogenesis can proceed through an exon-containing lariat precursor [J].
Barrett, Steven P. ;
Wang, Peter L. ;
Salzman, Julia .
ELIFE, 2015, 4 :1-18
[10]   Expression of Linear and Novel Circular Forms of an INK4/ARF-Associated Non-Coding RNA Correlates with Atherosclerosis Risk [J].
Burd, Christin E. ;
Jeck, William R. ;
Liu, Yan ;
Sanoff, Hanna K. ;
Wang, Zefeng ;
Sharpless, Norman E. .
PLOS GENETICS, 2010, 6 (12) :1-15