ProViz: protein interaction visualization and exploration

被引：67

作者：

Iragne, F ^{[1
]}

Nikolski, M ^{[1
]}

Mathieu, B ^{[1
]}

Auber, D ^{[1
]}

Sherman, D ^{[1
]}

机构：

[1] Univ Bordeaux 1, LaBRI UMR 5800, F-33405 Talence, France

来源：

BIOINFORMATICS | 2005年 / 21卷 / 02期

关键词：

D O I：

10.1093/bioinformatics/bth494

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

ProViz is a tool for the visualization of protein-protein interaction networks, developed by the IntAct European project. It provides facilities for navigating in large graphs and exploring biologically relevant features, and adopts emerging standards such as GO and PSI-MI.

引用

页码：272 / 274

页数：3

共 11 条

[1]

AUBER D, 2003, GRAPH DRAWING SOFTWA, P80

[2] Osprey: a network visualization system [J].

Breitkreutz, BJ ;

Stark, C ;

Tyers, M .

GENOME BIOLOGY, 2003, 4 (03)

[3]

FRICK A, 1994, LNCS, V894, P389

[4] IntAct: an open source molecular interaction database [J].

Hermjakob, H ;

Montecchi-Palazzi, L ;

Lewington, C ;

Mudali, S ;

Kerrien, S ;

Orchard, S ;

Vingron, M ;

Roechert, B ;

Roepstorff, P ;

Valencia, A ;

Margalit, H ;

Armstrong, J ;

Bairoch, A ;

Cesareni, G ;

Sherman, D ;

Apweller, R .

NUCLEIC ACIDS RESEARCH, 2004, 32 :D452-D455

[5] The HUPOPSI's Molecular Interaction format - a community standard for the representation of protein interaction data [J].

Hermjakob, H ;

Montecchi-Palazzi, L ;

Bader, G ;

Wojcik, R ;

Salwinski, L ;

Ceol, A ;

Moore, S ;

Orchard, S ;

Sarkans, U ;

von Mering, C ;

Roechert, B ;

Poux, S ;

Jung, E ;

Mersch, H ;

Kersey, P ;

Lappe, M ;

Li, YX ;

Zeng, R ;

Rana, D ;

Nikolski, M ;

Husi, H ;

Brun, C ;

Shanker, K ;

Grant, SGN ;

Sander, C ;

Bork, P ;

Zhu, WM ;

Pandey, A ;

Brazma, A ;

Jacq, B ;

Vidal, M ;

Sherman, D ;

Legrain, P ;

Cesareni, G ;

Xenarios, L ;

Eisenberg, D ;

Steipe, B ;

Hogue, C ;

Apweiler, R .

NATURE BIOTECHNOLOGY, 2004, 22 (02) :177-183

[6] A graphic editor for analyzing signal-transduction pathways [J].

Koike, T ;

Rzhetsky, A .

GENE, 2000, 259 (1-2) :235-244

[7]

Lappe M, 2001, Bioinformatics, V17 Suppl 1, pS149

[8] Protein-protein interaction maps: a lead towards cellular functions [J].

Legrain, P ;

Wojcik, J ;

Gauthier, JM .

TRENDS IN GENETICS, 2001, 17 (06) :346-352

[9]

MESSINGER EB, 1991, IEEE T SYST MAN CYB, V21, P1

[10] Cytoscape: A software environment for integrated models of biomolecular interaction networks [J].

Shannon, P ;

Markiel, A ;

Ozier, O ;

Baliga, NS ;

Wang, JT ;

Ramage, D ;

Amin, N ;

Schwikowski, B ;

Ideker, T .

GENOME RESEARCH, 2003, 13 (11) :2498-2504

← 1 2 →