A Chromosome-Level Reference Genome of Chinese Balloon Flower (Platycodon grandiflorus)

被引：17

作者：

Jia, Yanyan ^{[1
]}

Chen, Shaoying ^{[2
,3
]}

Chen, Weikai ^{[3
]}

Zhang, Ping ^{[2
]}

Su, Zhenjing ^{[2
,3
]}

Zhang, Lei ^{[2
,3
]}

Xu, Mengxin ^{[2
,3
]}

Guo, Li ^{[3
]}

机构：

[1] Xi An Jiao Tong Univ, Sch Automat Sci & Engn, Fac Elect & Informat Engn, Xian, Peoples R China

[2] Weifang Inst Technol, Sch Big Data, Weifang, Peoples R China

[3] Peking Univ, Inst Adv Agr Sci, Weifang, Peoples R China

来源：

FRONTIERS IN GENETICS | 2022年 / 13卷

基金：

中国国家自然科学基金;

关键词：

platycodon grandiflorus; genome assembly; Oxford nanopore; phylogenomics; Hi-C; PHYLOGENETIC ANALYSIS; ALIGNMENT; TOOL; IDENTIFICATION; TRANSCRIPTOME; DATABASE; PROGRAM; FINDER;

D O I：

10.3389/fgene.2022.869784

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

[No abstract available]

引用

页数：6

共 52 条

[21] Suppression of High-Fat Diet-Induced Obesity by Platycodon Grandiflorus in Mice Is Linked to Changes in the Gut Microbiota [J].

Ke, Weixin ;

Bonilla-Rosso, German ;

Engel, Philipp ;

Wang, Pan ;

Chen, Fang ;

Hu, Xiaosong .

JOURNAL OF NUTRITION, 2020, 150 (09) :2364-2374

[22]

Kent WJ, 2002, GENOME RES, V12, P656, DOI [10.1101/gr.229202, 10.1101/gr.229202. Article published online before March 2002]

[23]

Kim D, 2015, NAT METHODS, V12, P357, DOI [10.1038/NMETH.3317, 10.1038/nmeth.3317]

[24] Whole-genome, transcriptome, and methylome analyses provide insights into the evolution of platycoside biosynthesis in Platycodon grandiflorus, a medicinal plant [J].

Kim, Jungeun ;

Kang, Sang-Ho ;

Park, Sin-Gi ;

Yang, Tae-Jin ;

Lee, Yi ;

Kim, Ok Tae ;

Chung, Oksung ;

Lee, Jungho ;

Choi, Jae-Pil ;

Kwon, Soo-Jin ;

Lee, Keunpyo ;

Ahn, Byoung-Ohg ;

Lee, Dong Jin ;

Yoo, Seung-il ;

Shin, In-Gang ;

Um, Yurry ;

Lee, Dae Young ;

Kim, Geum-Soog ;

Hong, Chang Pyo ;

Bhak, Jong ;

Kim, Chang-Kug .

HORTICULTURE RESEARCH, 2020, 7 (01)

[25] Transcriptomic Analysis, Cloning, Characterization, and Expression Analysis of Triterpene Biosynthetic Genes and Triterpene Accumulation in the Hairy Roots of Platycodon grandiflorum Exposed to Methyl Jasmonate [J].

Kim, Yong-Kyoung ;

Sathasivam, Ramaraj ;

Kim, Yeon Bok ;

Kim, Jae Kwang ;

Park, Sang Un .

ACS OMEGA, 2021, 6 (19) :12820-12830

[26] Gene finding in novel genomes [J].

Korf, I .

BMC BIOINFORMATICS, 2004, 5 (1)

[27] TimeTree: A Resource for Timelines, Timetrees, and Divergence Times [J].

Kumar, Sudhir ;

Stecher, Glen ;

Suleski, Michael ;

Hedges, S. Blair .

MOLECULAR BIOLOGY AND EVOLUTION, 2017, 34 (07) :1812-1819

[28] Fermented Platycodon grandiflorum Extracts Relieve Airway Inflammation and Cough Reflex Sensitivity In Vivo [J].

Lee, Soyeon ;

Han, Eun Hye ;

Lim, Mi-Kyung ;

Lee, Sang-Ho ;

Yu, Heui Jong ;

Lim, Young Hee ;

Kang, Seongman .

JOURNAL OF MEDICINAL FOOD, 2020, 23 (10) :1060-1069

[29]

Li H, 2009, BIOINFORMATICS, V25, P1754, DOI [10.1093/bioinformatics/btp324, 10.1093/bioinformatics/btp698, 10.1093/bioinformatics/btp352]

[30] OrthoMCL: Identification of ortholog groups for eukaryotic genomes [J].

Li, L ;

Stoeckert, CJ ;

Roos, DS .

GENOME RESEARCH, 2003, 13 (09) :2178-2189

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