Is there a Mobius band in closed protein β-sheets?

被引:3
作者
Liu, WM [1 ]
机构
[1] Indiana Univ Purdue Univ, Dept Comp & Informat Sci, Indianapolis, IN 46202 USA
来源
PROTEIN ENGINEERING | 1997年 / 10卷 / 12期
关键词
beta-band; bifurcation; closed beta-sheet; Mobius band; pseudobifurcation;
D O I
10.1093/protein/10.12.1373
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Protein beta-strands can form beta-barrels and other complicated structures. This paper defines bifurcations and pseudobifurcations of beta-sheets. They are important structural elements for protein folding. This paper also presents a characteristic number that can be used to test whether the surface of a closed beta-sheet is one- or two-sided. Searching the whole Protein Data Bank released in April 1997 with the definition of beta-structures given by the DSSP program, we do not find any one-sided beta-Mobius band. However, there are interesting structures such as beta-bands with odd number of antiparallel ladders and odd number of bifurcations. There are also beta-structures that are closed only at a singular point. Adding a small patch near the singular point in different ways can make it a one- or two-sided surface. The catalytic triad of a GMP synthetase (1GPM) is near the singular point of such a beta-sheet.
引用
收藏
页码:1373 / 1377
页数:5
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