Ten years of barcoding at the African Centre for DNA Barcoding

被引:24
作者
Bezeng, B. S. [1 ]
Davies, T. J. [1 ,2 ]
Daru, B. H. [3 ]
Kabongo, R. M. [1 ]
Maurin, O. [1 ,4 ]
Yessoufou, K. [5 ]
van der Bank, H. [1 ]
van der Bank, M. [1 ]
机构
[1] Univ Johannesburg, African Ctr DNA Barcoding, POB 524, ZA-2006 Johannesburg, South Africa
[2] McGill Univ, Dept Biol, 1205 Ave Docteur Penfield, Montreal, PQ H3A 0G4, Canada
[3] Harvard Univ, Dept Organism & Evolutionary Biol, 22 Divin Ave, Cambridge, MA 02138 USA
[4] Royal Bot Gardens, Richmond TW9 3AB, Surrey, England
[5] Univ Johannesburg, Dept Geog Environm Management & Energy Studies, APK Campus, ZA-2006 Johannesburg, South Africa
基金
新加坡国家研究基金会;
关键词
DNA barcoding; African flora and fauna; matK; rbcLa; CO1; species delimitation; ecological applications; DARWINS NATURALIZATION CONUNDRUM; SOUTH-AFRICA; PHYLOGENETIC POSITION; SUBFAMILY ALOOIDEAE; ACACIA-S.L; DIVERSIFICATION; COMBRETACEAE; SAVANNA; PLANTS; CLASSIFICATION;
D O I
10.1139/gen-2016-0198
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The African Centre for DNA Barcoding (ACDB) was established in 2005 as part of a global initiative to accurately and rapidly survey biodiversity using short DNA sequences. The mitochondrial cytochrome c oxidase 1 gene (CO1) was rapidly adopted as the de facto barcode for animals. Following the evaluation of several candidate loci for plants, the Plant Working Group of the Consortium for the Barcoding of Life in 2009 recommended that two plastid genes, rbcLa and matK, be adopted as core DNA barcodes for terrestrial plants. To date, numerous studies continue to test the discriminatory power of these markers across various plant lineages. Over the past decade, we at the ACDB have used these core DNA barcodes to generate a barcode library for southern Africa. To date, the ACDB has contributed more than 21 000 plant barcodes and over 3000 CO1 barcodes for animals to the Barcode of Life Database (BOLD). Building upon this effort, we at the ACDB have addressed questions related to community assembly, biogeography, phylogenetic diversification, and invasion biology. Collectively, our work demonstrates the diverse applications of DNA barcoding in ecology, systematics, evolutionary biology, and conservation.
引用
收藏
页码:629 / 638
页数:10
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