Modelling flowering of plants using time-to-event methods

被引:19
作者
Ritz, Christian [1 ]
Pipper, Christian [1 ]
Yndgaard, Flemming [2 ]
Fredlund, Kenneth [2 ]
Steinrucken, Gerhard [2 ]
机构
[1] Univ Copenhagen, Fac Life Sci, Dept Basic Sci & Environm, Stat Grp, DK-1871 Frederiksberg C, Denmark
[2] Syngenta Seeds, SE-26123 Landskrona, Sweden
关键词
Bolting; Climate effect; Cumulated residual; Excess hazard; Sugar beet; Survival analysis; Time dynamics; Vernalization; THERMAL TIME; SUGAR-BEET; COX MODEL; CHECKING; RESIDUALS; SURVIVAL;
D O I
10.1016/j.eja.2009.10.002
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Climate and environmental factors are known to influence the propensity of plants to flower. In order to capture the time dynamics in the underlying biological processes, this paper proposes to use a grouped-data survival analysis methodology. We formulate a semi-parametric model for the hazard rate of flowering, which allows all available climatic and environmental data to be included. Estimation can be carried using a generalized linear model approach. In addition, the model can be validated by means of recently developed residual-based model-checking procedures similar to what is available for ordinary regression models. The main finding is that the model proposed captures the major trends and is a first step in the direction of a model-based quantification of some climatic and environmental factors that influence the flowering of plants. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码:155 / 161
页数:7
相关论文
共 22 条
[1]  
Alt C, 2001, GARTENBAUWISSENSCHAF, V66, P46
[2]  
[Anonymous], 1984, Analysis of survival data
[3]  
[Anonymous], 2012, Statistical models based on counting processes
[4]  
[Anonymous], 1983, Generalized Linear Models
[5]   HUMAN-CAPITAL INVESTMENTS OR NORMS OF ROLE TRANSITION - HOW WOMENS SCHOOLING AND CAREER AFFECT THE PROCESS OF FAMILY FORMATION [J].
BLOSSFELD, HP ;
HUININK, J .
AMERICAN JOURNAL OF SOCIOLOGY, 1991, 97 (01) :143-168
[6]   Bolting control by low temperatures in root chicory (Cichorium intybus var. sativum) [J].
Dielen, V ;
Notté, C ;
Lutts, S ;
Debavelaere, V ;
Van Herck, JC ;
Kinet, JM .
FIELD CROPS RESEARCH, 2005, 94 (01) :76-85
[7]  
Fauchere J., 2003, P 1 JOINT 2RB ASSBT, P189
[8]   EFFECT OF DAY AND NIGHT TEMPERATURE AT DIFFERENT STAGES OF GROWTH ON BOLTING IN CHINESE CABBAGE [J].
GUTTORMSEN, G ;
MOE, R .
SCIENTIA HORTICULTURAE, 1985, 25 (03) :225-233
[9]  
HEIDE OM, 1973, ENV CONTROL BOLTING
[10]   Impact of different environments in Europe on yield and quality of sugar beet genotypes [J].
Hoffmann, Christa M. ;
Huijbregts, Toon ;
van Swaaij, Noud ;
Jansen, Rudolf .
EUROPEAN JOURNAL OF AGRONOMY, 2009, 30 (01) :17-26