Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines

被引：1

作者：

Azarin, Kirill ^{[1
]}

Makarenko, Maksim ^{[1
]}

Usatov, Alexander ^{[1
]}

Gorbachenko, Oleg ^{[2
]}

Kovalevich, Alexey ^{[1
]}

Gavrilova, Vera ^{[3
]}

机构：

[1] Southern Fed Univ, Rostov Na Donu, Russia

[2] All Russia Res Inst Oil Crops, Zlhdanov Don Expt Stn, Pos Oporny, Rostov Region, Russia

[3] NI Vavilov All Russian Inst Plant Genet Resources, St Petersburg, Russia

来源：

DATA IN BRIEF | 2019年 / 25卷

关键词：

Chloroplast genome; Polymorphic site; Alloplasmic CMS line; Sunflower; TOOL;

D O I：

10.1016/j.dib.2019.104072

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Data presents the chloroplast genome sequences of the five sunflower alloplasmic cytoplasmic male sterility (CMS) lines obtained with using the Illumina MiSeq, HiSeq and NextSeq platforms. The sunflower alloplasmic CMS lines has the same nuclear genome from line HA89, but they differ in cytoplasmic genomes, inherited from annual (PET1, PET2 - H. petiolaris, ANN2 - H. annuus) and perennial (MAX1 - H. maximilliani) species of the genus Helianthus L. The chloroplast genomes were annotated. Also presented is a dataset of variable sites such as single nucleotide polymorphism (SNP), simple sequence repeat (SSR), insertion and deletion (INDEL) in the chloroplast genome of the sequenced alloplasmic lines. (C) 2019 The Authors. Published by Elsevier Inc.

引用

页数：9

共 14 条

[11] The Complete Chloroplast Genomes of Two Lespedeza Species: Insights into Codon Usage Bias, RNA Editing Sites, and Phylogenetic Relationships in Desmodieae (Fabaceae: Papilionoideae)
Somaratne, Yamuna
Guan, De-Long
Wang, Wen-Qiang
Zhao, Liang
Xu, Sheng-Quan
PLANTS-BASEL, 2020, 9 (01):
[12] Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
Weiwen Wang
Miriam Schalamun
Alejandro Morales-Suarez
David Kainer
Benjamin Schwessinger
Robert Lanfear
BMC Genomics, 19
[13] Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
Wang, Weiwen
Schalamun, Miriam
Morales-Suarez, Alejandro
Kainer, David
Schwessinger, Benjamin
Lanfear, Robert
BMC GENOMICS, 2018, 19
[14] VirusFinder: Software for Efficient and Accurate Detection of Viruses and Their Integration Sites in Host Genomes through Next Generation Sequencing Data
Wang, Qingguo
Jia, Peilin
Zhao, Zhongming
PLOS ONE, 2013, 8 (05):

← 1 2 →