Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines

被引：1

作者：

Azarin, Kirill ^{[1
]}

Makarenko, Maksim ^{[1
]}

Usatov, Alexander ^{[1
]}

Gorbachenko, Oleg ^{[2
]}

Kovalevich, Alexey ^{[1
]}

Gavrilova, Vera ^{[3
]}

机构：

[1] Southern Fed Univ, Rostov Na Donu, Russia

[2] All Russia Res Inst Oil Crops, Zlhdanov Don Expt Stn, Pos Oporny, Rostov Region, Russia

[3] NI Vavilov All Russian Inst Plant Genet Resources, St Petersburg, Russia

来源：

DATA IN BRIEF | 2019年 / 25卷

关键词：

Chloroplast genome; Polymorphic site; Alloplasmic CMS line; Sunflower; TOOL;

D O I：

10.1016/j.dib.2019.104072

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Data presents the chloroplast genome sequences of the five sunflower alloplasmic cytoplasmic male sterility (CMS) lines obtained with using the Illumina MiSeq, HiSeq and NextSeq platforms. The sunflower alloplasmic CMS lines has the same nuclear genome from line HA89, but they differ in cytoplasmic genomes, inherited from annual (PET1, PET2 - H. petiolaris, ANN2 - H. annuus) and perennial (MAX1 - H. maximilliani) species of the genus Helianthus L. The chloroplast genomes were annotated. Also presented is a dataset of variable sites such as single nucleotide polymorphism (SNP), simple sequence repeat (SSR), insertion and deletion (INDEL) in the chloroplast genome of the sequenced alloplasmic lines. (C) 2019 The Authors. Published by Elsevier Inc.

引用

页数：9

共 14 条

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Azarin, Kirill
Usatov, Alexander
Makarenko, Maksim
Gorbachenko, Oleg
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Gavrilova, Vera
DATA IN BRIEF, 2021, 35
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American Journal of Biochemistry and Biotechnology, 2020, 16 (01) : 70 - 75
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Makarenko, Maksim S.
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Azarin, Kirill, V
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Gavrilova, Vera A.
PEERJ, 2018, 6
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Theoretical and Applied Genetics, 1999, 99 : 859 - 867
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THEORETICAL AND APPLIED GENETICS, 1999, 99 (05) : 859 - 867
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BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT, 2009, 23 (03) : 1309 - 1315
[7] Space environment induced mutations prefer to occur at polymorphic sites of rice genomes
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ADVANCES IN SPACE RESEARCH, 2007, 40 (04) : 523 - 527
[8] Genetic authentication: Differentiation of hazelnut cultivars using polymorphic sites of the chloroplast genome
Lang, Christina
Weber, Nico
Moeller, Maya
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Kohlbacher, Oliver
Fischer, Markus
FOOD CONTROL, 2021, 130
[9] Heredity of chloroplast and nuclear genomes of asymmetric somatic hybrid lines between wheat and couch grass
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ACTA BOTANICA SINICA, 2004, 46 (01): : 110 - 115
[10] Analysis of the RNA Editing Sites and Orthologous Gene Function of Transcriptome and Chloroplast Genomes in the Evolution of Five Deutzia Species
Cai, Hongyu
Ren, Yachao
Du, Juan
Liu, Lingyun
Long, Lianxiang
Yang, Minsheng
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (16)

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