Establishing a cancer driver gene signature-based risk model for predicting the prognoses of gastric cancer patients

被引:7
作者
Chen, Jun [1 ]
Zhou, Chao [2 ]
Liu, Ying [3 ]
机构
[1] Nanchang Univ, Affiliated Hosp 1, Dept Oncol, Nanchang 330006, Jiangxi, Peoples R China
[2] Nanchang Univ, Jiangxi Prov Peoples Hosp, Dept Neurol, Nanchang 330006, Jiangxi, Peoples R China
[3] Nanchang Univ, Affiliated Hosp 1, Dept Emergency, Nanchang 330006, Jiangxi, Peoples R China
来源
AGING-US | 2022年 / 14卷 / 05期
关键词
gastric cancer; cancer driver gene; risk signature; nomogram; prognosis; GNAS; MUSASHI-2;
D O I
10.18632/aging.203948
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
YY Despite the high prevalence of gastric cancer (GC), molecular biomarkers that can reliably detect GC are yet to be discovered. The present study aimed to establish a robust gene signature based on cancer driver genes (CDGs) that can predict GC prognosis. Transcriptional profiles and clinical data from GC patients were analyzed using univariate Cox regression analysis and the least absolute shrinkage and selection (LASSO)-penalized Cox regression analysis to select optimal prognosis-related genes for modeling. Time-dependent receiver operating characteristic (ROC) and Kaplan-Meier analyses were done to assess the predictive power of this gene signature. A nomogram model for prediction of survival of GC patients was established using the CDG signature and clinical information, and a seven-CDG signature was identified. Risk scores were calculated using this signature, and patients were subsequently divided into high- and low-risk groups; high-risk patients in the training and validation datasets had poorer prognoses than low-risk patients. Cox regression analysis revealed that the CDG signature is an independent prognostic factor for GC. The signature and other clinical features were used to construct a nomogram for predicting overall GC patient survival. Calibration and decision curve analysis showed that the nomogram accurately predicted survival, highlighting its clinical utility. Thus, we established a novel CDG signature and nomogram for predicting GC prognosis, which may facilitate personalized treatment of GC.
引用
收藏
页码:2383 / 2399
页数:17
相关论文
共 36 条
[11]   Mutations of key driver genes in colorectal cancer progression and metastasis [J].
Huang, Dongdong ;
Sun, Wenjie ;
Zhou, Yuwei ;
Li, Peiwei ;
Chen, Fang ;
Chen, Hanwen ;
Xia, Dajing ;
Xu, Enping ;
Lai, Maode ;
Wu, Yihua ;
Zhang, Honghe .
CANCER AND METASTASIS REVIEWS, 2018, 37 (01) :173-187
[12]   Heat Shock Factor 1 as a Prognostic and Diagnostic Biomarker of Gastric Cancer [J].
Kim, Woong ;
Kim, Seok-Jun .
BIOMEDICINES, 2021, 9 (06)
[13]   ISOLATION AND CHARACTERIZATION OF THE HUMAN GS-ALPHA GENE [J].
KOZASA, T ;
ITOH, H ;
TSUKAMOTO, T ;
KAZIRO, Y .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (07) :2081-2085
[14]   Musashi-2 (MSI2) supports TGF-β signaling and inhibits claudins to promote non-small cell lung cancer (NSCLC) metastasis [J].
Kudinov, Alexander E. ;
Deneka, Alexander ;
Nikonova, Anna S. ;
Beck, Tim N. ;
Ahn, Young-Ho ;
Liu, Xin ;
Martinez, Cathleen F. ;
Schultz, Fred A. ;
Reynolds, Samuel ;
Yang, Dong-Hua ;
Cai, Kathy Q. ;
Yaghmour, Khaled M. ;
Baker, Karmel A. ;
Egleston, Brian L. ;
Nicolas, Emmanuelle ;
Chikwem, Adaeze ;
Andrianov, Gregory ;
Singh, Shelly ;
Borghaei, Hossein ;
Serebriiskii, Ilya G. ;
Gibbons, Don L. ;
Kurie, Jonathan M. ;
Golemis, Erica A. ;
Boumber, Yanis .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (25) :6955-6960
[15]   Musashi-2 is a novel regulator of paclitaxel sensitivity in ovarian cancer cells [J].
Lee, Jeongsuk ;
An, Sungkwan ;
Choi, Yeong Min ;
Lee, Junwoo ;
Ahn, Kyu Joong ;
Lee, Jae Ho ;
Kim, Tae Jin ;
An, In-Sook ;
Bae, Seunghee .
INTERNATIONAL JOURNAL OF ONCOLOGY, 2016, 49 (05) :1945-1952
[16]   GNAS-AS1/miR-4319/NECAB3 axis promotes migration and invasion of non-small cell lung cancer cells by altering macrophage polarization [J].
Li, Zhixin ;
Feng, Changjiang ;
Guo, Junhong ;
Hu, Xuefei ;
Xie, Dong .
FUNCTIONAL & INTEGRATIVE GENOMICS, 2020, 20 (01) :17-28
[17]   The Differential Expression of Core Genes in Nucleotide Excision Repair Pathway Indicates Colorectal Carcinogenesis and Prognosis [J].
Liu, Jingwei ;
Li, Hao ;
Sun, Liping ;
Feng, Xue ;
Wang, Zhenning ;
Yuan, Yuan ;
Xing, Chengzhong .
BIOMED RESEARCH INTERNATIONAL, 2018, 2018
[18]   The Cancer Genome Atlas (TCGA) based m6A methylation-related genes predict prognosis in hepatocellular carcinoma [J].
Liu, Jun ;
Sun, Guili ;
Pan, Shangling ;
Qin, Mengbin ;
Ouyang, Rong ;
Li, Zhongzhuan ;
Huang, Jiean .
BIOENGINEERED, 2020, 11 (01) :759-768
[19]   A compendium of mutational cancer driver genes [J].
Martinez-Jimenez, Francisco ;
Muinos, Ferran ;
Sentis, Ines ;
Deu-Pons, Jordi ;
Reyes-Salazar, Iker ;
Arnedo-Pac, Claudia ;
Mularoni, Loris ;
Pich, Oriol ;
Bonet, Jose ;
Kranas, Hanna ;
Gonzalez-Perez, Abel ;
Lopez-Bigas, Nuria .
NATURE REVIEWS CANCER, 2020, 20 (10) :555-572
[20]  
Newman AM, 2015, NAT METHODS, V12, P453, DOI [10.1038/nmeth.3337, 10.1038/NMETH.3337]