Establishing a cancer driver gene signature-based risk model for predicting the prognoses of gastric cancer patients

被引:7
作者
Chen, Jun [1 ]
Zhou, Chao [2 ]
Liu, Ying [3 ]
机构
[1] Nanchang Univ, Affiliated Hosp 1, Dept Oncol, Nanchang 330006, Jiangxi, Peoples R China
[2] Nanchang Univ, Jiangxi Prov Peoples Hosp, Dept Neurol, Nanchang 330006, Jiangxi, Peoples R China
[3] Nanchang Univ, Affiliated Hosp 1, Dept Emergency, Nanchang 330006, Jiangxi, Peoples R China
来源
AGING-US | 2022年 / 14卷 / 05期
关键词
gastric cancer; cancer driver gene; risk signature; nomogram; prognosis; GNAS; MUSASHI-2;
D O I
10.18632/aging.203948
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
YY Despite the high prevalence of gastric cancer (GC), molecular biomarkers that can reliably detect GC are yet to be discovered. The present study aimed to establish a robust gene signature based on cancer driver genes (CDGs) that can predict GC prognosis. Transcriptional profiles and clinical data from GC patients were analyzed using univariate Cox regression analysis and the least absolute shrinkage and selection (LASSO)-penalized Cox regression analysis to select optimal prognosis-related genes for modeling. Time-dependent receiver operating characteristic (ROC) and Kaplan-Meier analyses were done to assess the predictive power of this gene signature. A nomogram model for prediction of survival of GC patients was established using the CDG signature and clinical information, and a seven-CDG signature was identified. Risk scores were calculated using this signature, and patients were subsequently divided into high- and low-risk groups; high-risk patients in the training and validation datasets had poorer prognoses than low-risk patients. Cox regression analysis revealed that the CDG signature is an independent prognostic factor for GC. The signature and other clinical features were used to construct a nomogram for predicting overall GC patient survival. Calibration and decision curve analysis showed that the nomogram accurately predicted survival, highlighting its clinical utility. Thus, we established a novel CDG signature and nomogram for predicting GC prognosis, which may facilitate personalized treatment of GC.
引用
收藏
页码:2383 / 2399
页数:17
相关论文
共 36 条
  • [1] Gastric squamous cell carcinoma and gastric adenosquamous carcinoma, clinical features and outcomes of rare clinical entities: a National Cancer Database (NCDB) analysis
    Akce, Mehmet
    Jiang, Renjian
    Alese, Olatunji B.
    Shaib, Walid L.
    Wu, Christina
    Behera, Madhusmita
    El-Rayes, Bassel F.
    [J]. JOURNAL OF GASTROINTESTINAL ONCOLOGY, 2019, 10 (01) : 85 - 94
  • [2] Damaged-DNA Binding Protein-2 Drives Apoptosis Following DNA Damage
    Bagchi, Srilata
    Raychaudhuri, Pradip
    [J]. CELL DIVISION, 2010, 5
  • [3] NRIP/DCAF6 stabilizes the androgen receptor protein by displacing DDB2 from the CUL4A-DDB1 E3 ligase complex in prostate cancer
    Chen, Hsin-Hsiung
    Fan, Ping
    Chang, Szu-Wei
    Tsao, Yeou-Ping
    Huang, Hsiang-Po
    Chen, Show-Li
    [J]. ONCOTARGET, 2017, 8 (13) : 21501 - 21515
  • [4] Prognostic Prediction Using a Stemness Index-Related Signature in a Cohort of Gastric Cancer
    Chen, Xiaowei
    Zhang, Dawei
    Jiang, Fei
    Shen, Yan
    Li, Xin
    Hu, Xueju
    Wei, Pingmin
    Shen, Xiaobing
    [J]. FRONTIERS IN MOLECULAR BIOSCIENCES, 2020, 7
  • [5] Aminopeptidase A initiates tumorigenesis and enhances tumor cell stemness via TWIST1 upregulation in colorectal cancer
    Chuang, Hui-Yu
    Jiang, Jeng-Kae
    Yang, Muh-Hwa
    Wang, Hsei-Wei
    Li, Ming-Chun
    Tsai, Chan-Yen
    Jhang, Yau-Yun
    Huang, Jason C.
    [J]. ONCOTARGET, 2017, 8 (13) : 21266 - 21280
  • [6] Molecular analysis of gastric cancer identifies subtypes associated with distinct clinical outcomes
    Cristescu, Razvan
    Lee, Jeeyun
    Nebozhyn, Michael
    Kim, Kyoung-Mee
    Ting, Jason C.
    Wong, Swee Seong
    Liu, Jiangang
    Yue, Yong Gang
    Wang, Jian
    Yu, Kun
    Ye, Xiang S.
    Do, In-Gu
    Liu, Shawn
    Gong, Lara
    Fu, Jake
    Jin, Jason Gang
    Choi, Min Gew
    Sohn, Tae Sung
    Lee, Joon Ho
    Bae, Jae Moon
    Kim, Seung Tae
    Park, Se Hoon
    Sohn, Insuk
    Jung, Sin-Ho
    Tan, Patrick
    Chen, Ronghua
    Hardwick, James
    Kang, Won Ki
    Ayers, Mark
    Dai Hongyue
    Reinhard, Christoph
    Loboda, Andrey
    Kim, Sung
    Aggarwal, Amit
    [J]. NATURE MEDICINE, 2015, 21 (05) : 449 - U217
  • [7] Induction of Gastric Cancer by Successive Oncogenic Activation in the Corpus
    Douchi, Daisuke
    Yamamura, Akihiro
    Matsuo, Junichi
    Lim, Yi Hui Melissa
    Nuttonmanit, Napat
    Shimura, Mitsuhiro
    Suda, Kazuto
    Chen, Sabirah
    Pang, ShuChin
    Kohu, Kazuyoshi
    Abe, Takaya
    Shioi, Go
    Kim, Guowei
    Shabbir, Asim
    Srivastava, Supriya
    Unno, Michiaki
    So, Jimmy Bok-Yan
    Teh, Ming
    Yeoh, Khay Guan
    Chuang, Linda Shyue Huey
    Ito, Yoshiaki
    [J]. GASTROENTEROLOGY, 2021, 161 (06) : 1907 - +
  • [8] miR-125b Acts as a Tumor Suppressor in Breast Tumorigenesis via Its Novel Direct Targets ENPEP, CK2-α, CCNJ, and MEGF9
    Feliciano, Andrea
    Castellvi, Josep
    Artero-Castro, Ana
    Leal, Jose A.
    Romagosa, Cleofe
    Hernandez-Losa, Javier
    Peg, Vicente
    Fabra, Angels
    Vidal, Francisco
    Kondoh, Hiroshi
    Ramon y Cajal, Santiago
    LLeonart, Matilde E.
    [J]. PLOS ONE, 2013, 8 (10):
  • [9] Image-based detection and targeting of therapy resistance in pancreatic adenocarcinoma
    Fox, Raymond G.
    Lytle, Nikki K.
    Jaquish, Dawn V.
    Park, Frederick D.
    Ito, Takahiro
    Bajaj, Jeevisha
    Koechlein, Claire S.
    Zimdahl, Bryan
    Yano, Masato
    Kopp, Janel L.
    Kritzik, Marcie
    Sicklick, Jason K.
    Sander, Maike
    Grandgenett, Paul M.
    Hollingsworth, Michael A.
    Shibata, Shinsuke
    Pizzo, Donald
    Valasek, Mark A.
    Sasik, Roman
    Scadeng, Miriam
    Okano, Hideyuki
    Kim, Youngsoo
    MacLeod, A. Robert
    Lowy, Andrew M.
    Reya, Tannishtha
    [J]. NATURE, 2016, 534 (7607) : 407 - +
  • [10] Mutations of key driver genes in colorectal cancer progression and metastasis
    Huang, Dongdong
    Sun, Wenjie
    Zhou, Yuwei
    Li, Peiwei
    Chen, Fang
    Chen, Hanwen
    Xia, Dajing
    Xu, Enping
    Lai, Maode
    Wu, Yihua
    Zhang, Honghe
    [J]. CANCER AND METASTASIS REVIEWS, 2018, 37 (01) : 173 - 187