Brassicaceae host plants mask the feedback from the previous year's soil history on bacterial communities, except when they experience drought

被引:5
作者
Blakney, Andrew J. C. [1 ]
Bainard, Luke D. [2 ]
St-Arnaud, Marc [1 ]
Hijri, Mohamed [1 ,3 ]
机构
[1] Univ Montreal & Jardin Botan Montreal, Inst Rech Biol Vegetale, Dept Sci Biol, Montreal, PQ, Canada
[2] Agr & Agri Food Canada, Agassiz Res & Dev Ctr, Agassiz, BC V0M 1A2, Canada
[3] Mohammed VI Polytech Univ UM6P, African Genome Ctr, Lot 660,Hay Moulay, Ben Guerir 43150, Morocco
基金
加拿大自然科学与工程研究理事会;
关键词
RHIZOSPHERE MICROBIOME; ROOT MICROBIOTA; PHYLOGENETIC DIVERSITY; BETA-DIVERSITY; NITROGEN; QUANTIFICATION; DIVERGENCE; STABILITY; ABUNDANCE; INSIGHTS;
D O I
10.1111/1462-2920.16046
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Soil history operates through time to influence the structure and biodiversity of soil bacterial communities. Examining how different soil histories endure will help clarify the rules of bacterial community assembly. In this study, we established three different soil histories in field trials; the following year these plots were planted with five different Brassicaceae species. We hypothesized that the previously established soil histories would continue to structure the subsequent Brassicaceae bacterial root and rhizosphere communities. We used a MiSeq 16S rRNA metabarcoding strategy to determine the impact of different soil histories on the structure and biodiversity of the bacterial root and rhizosphere communities from the five different Brassicaceae host plants. We found that the Brassicaceae hosts were consistently significant factors in structuring the bacterial communities. Four host plants (Sinapis alba, Brassica napus, B. juncea, B. carinata) formed similar bacterial communities, regardless of different soil histories. Camelina sativa host plants structured phylogenetically distinct bacterial communities compared to the other hosts, particularly in their roots. Soil history established the previous year was only a significant factor for bacterial community structure when the feedback of the Brassicaceae host plants was weakened, potentially due to limited soil moisture during a dry year. Understanding how soil history is involved in the structure and biodiversity of bacterial communities through time is a limitation in microbial ecology and is required for employing microbiome technologies in improving agricultural systems.
引用
收藏
页码:3529 / 3548
页数:20
相关论文
共 89 条
[61]   Drought and host selection influence bacterial community dynamics in the grass root microbiome [J].
Naylor, Dan ;
DeGraaf, Stephanie ;
Purdom, Elizabeth ;
Coleman-Derr, Devin .
ISME JOURNAL, 2017, 11 (12) :2691-2704
[62]   Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl polluted moorland soil [J].
Nogales, B ;
Moore, ERB ;
Abraham, WR ;
Timmis, KN .
ENVIRONMENTAL MICROBIOLOGY, 1999, 1 (03) :199-212
[63]   Rotational Effects of Legumes and Non-Legumes on Hybrid Canola and Malting Barley [J].
O'Donovan, John T. ;
Grant, Cynthia A. ;
Blackshaw, Robert E. ;
Harker, K. Neil ;
Johnson, Eric. N. ;
Gan, Yantai ;
Lafond, Guy P. ;
May, William E. ;
Turkington, T. Kelly ;
Lupwayi, Newton Z. ;
Stevenson, F. Craig ;
McLaren, Debra L. ;
Khakbazan, Mohammad ;
Smith, Elwin G. .
AGRONOMY JOURNAL, 2014, 106 (06) :1921-1932
[64]  
Oksanen J., 2022, vegan: Community Ecology Package
[65]   Absolute quantification of microbial taxon abundances [J].
Props, Ruben ;
Kerckhof, Frederiek-Maarten ;
Rubbens, Peter ;
De Vrieze, Jo ;
Sanabria, Emma Hernandez ;
Waegeman, Willem ;
Monsieurs, Pieter ;
Hammes, Frederik ;
Boon, Nico .
ISME JOURNAL, 2017, 11 (02) :584-587
[66]  
R Core Team, 2020, R: A language and environment for statistical computing
[67]   The role of locally adapted mycorrhizas and rhizobacteria in plant-soil feedback systems [J].
Revillini, Daniel ;
Gehring, Catherine A. ;
Johnson, Nancy Collins .
FUNCTIONAL ECOLOGY, 2016, 30 (07) :1086-1098
[68]   Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms [J].
Richardson, Alan E. ;
Barea, Jose-Miguel ;
McNeill, Ann M. ;
Prigent-Combaret, Claire .
PLANT AND SOIL, 2009, 321 (1-2) :305-339
[69]   Standards and Guidelines for Validating Next-Generation Sequencing Bioinformatics Pipelines A Joint Recommendation of the Association for Molecular Pathology and the College of American Pathologists [J].
Roy, Somak ;
Coldren, Christopher ;
Karunamurthy, Arivarasan ;
Kip, Nefize S. ;
Klee, Eric W. ;
Lincoln, Stephen E. ;
Leon, Annette ;
Pullambhatla, Mrudula ;
Temple-Smolkin, Robyn L. ;
Voelkerding, Karl V. ;
Wang, Chen ;
Carter, Alexis B. .
JOURNAL OF MOLECULAR DIAGNOSTICS, 2018, 20 (01) :4-27
[70]   Prolonged drought imparts lasting compositional changes to the rice root microbiome [J].
Santos-Medellin, Christian ;
Liechty, Zachary ;
Edwards, Joseph ;
Nguyen, Bao ;
Huang, Bihua ;
Weimer, Bart C. ;
Sundaresan, Venkatesan .
NATURE PLANTS, 2021, 7 (08) :1065-+