Characterization of the complete mitochondrial genome of Ageratum conyzoides

被引：4

作者：

Luo, Ze-Ping ^{[1
]}

Pan, Li-Wei ^{[1
]}

机构：

[1] Hechi Univ, Coll Chem & Bioengn, Hechi 546300, Guangxi, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

关键词：

Ageratum conyzoides; mitochondrial genome; Illumina sequencing; phylogenetic analysis; ALGORITHM;

D O I：

10.1080/23802359.2019.1676176

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

As a pharmaceutical plant with multi-bioactivity, Ageratum conyzoides appears to be a valuable agricultural resource. In this study, the complete mitochondrial (mt) genome of A. conyzoides was sequenced through Illumina sequencing method, and the mt genome was recovered after de novo assembly and annotation. The results showed that the 219,198?bp mt genome has a total of 52 genes, including 30 protein-coding genes, 3 rRNA genes and 19 tRNA genes. The overall GC content of this mitogenome is 45.4%. By phylogenetic analysis using maximum-likelihood (ML) method, A. conyzoides showed the closest relationship with Diplostephium hartwegii in the family of Asteroideae.

引用

页码：3540 / 3541

页数：2

共 12 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2] HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching [J].

Bi, Guiqi ;

Mao, Yunxiang ;

Xing, Qikun ;

Cao, Min .

GENOMICS, 2018, 110 (01) :18-22

[3] Phylogeny.fr: robust phylogenetic analysis for the non-specialist [J].

Dereeper, A. ;

Guignon, V. ;

Blanc, G. ;

Audic, S. ;

Buffet, S. ;

Chevenet, F. ;

Dufayard, J. -F. ;

Guindon, S. ;

Lefort, V. ;

Lescot, M. ;

Claverie, J. -M. ;

Gascuel, O. .

NUCLEIC ACIDS RESEARCH, 2008, 36 :W465-W469

[4] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].

Hahn, Christoph ;

Bachmann, Lutz ;

Chevreux, Bastien .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129

[5] PLANN: A COMMAND-LINE APPLICATION FOR ANNOTATING PLASTOME SEQUENCES [J].

Huang, Daisie I. ;

Cronk, Quentin C. B. .

APPLICATIONS IN PLANT SCIENCES, 2015, 3 (08)

[6]

Kalyaanamoorthy S, 2017, NAT METHODS, V14, P587, DOI [10.1038/NMETH.4285, 10.1038/nmeth.4285]

[7] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].

Lam-Tung Nguyen ;

Schmidt, Heiko A. ;

von Haeseler, Arndt ;

Bui Quang Minh .

MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274

[8] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].

Lowe, TM ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964

[9]

Ming LC., 1999, Perspectives on New Crops and New Uses, P469

[10] PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data [J].

Ruby, J. Graham ;

Bellare, Priya ;

DeRisi, Joseph L. .

G3-GENES GENOMES GENETICS, 2013, 3 (05) :865-880

← 1 2 →