Characterization of the complete mitochondrial genome of Sinocyclocheilus lingyunensis (Cypriniformes: Cyprinidae)

被引：0

作者：

Li, Peng ^{[1
]}

Yang, Jian ^{[1
]}

机构：

[1] Nanning Normal Univ, Key Lab Environm Change & Resources Use Beibu Gul, Nanning, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 06期

关键词：

Mitochondrial genome; Sinocyclocheilus lingyunensis; phylogeny;

D O I：

10.1080/23802359.2021.1914222

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Sinocyclocheilus lingyunensis is endemic to Youjiang River in Guangxi, Southwestern China. In this study, the complete mitochondrial genome of S. lingyunensis was sequenced. It was determined to be 16,572 bases. The overall base composition was 31.9% A, 25.3% T, 26.9% C, 15.9% G with 42.8% GC content. The nucleotide sequence data of 12 heavy-strand protein-coding genes of S. lingyunensis and other 16 Sinocyclocheilus species were used for phylogenetic analyses. Trees constructed using Bayesian inference showed strong support for a topology indicating Sinocyclocheilus species as a monophyletic group.

引用

页码：1759 / 1760

页数：2

共 12 条

[1] fastp: an ultra-fast all-in-one FASTQ preprocessor [J].

Chen, Shifu ;

Zhou, Yanqing ;

Chen, Yaru ;

Gu, Jia .

BIOINFORMATICS, 2018, 34 (17) :884-890

[2] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].

Hahn, Christoph ;

Bachmann, Lutz ;

Chevreux, Bastien .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129

[3]

Lan JH., 2013, CAVE FISHES GUANGXI, P209

[4] Complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus oxycephalus (Cypriniformes: Cyprinidae) [J].

Li, Chunqing ;

Huang, Haitao ;

Yang, Sifan ;

He, Hao ;

Fu, Qingyong ;

Chen, Shanyuan ;

Xiao, Heng .

MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01) :243-244

[5] The complete mitochondrial genome sequence of Sinocyclocheilus jii (Cypriniformes: Cyprinidae) and phylogenetic implications [J].

Li, Chunqing ;

Xiang, Xiaohan ;

Ning, Tiao ;

Chen, Shanyuan ;

Xiao, Heng .

MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02) :638-639

[6]

Li Wei-xian, 2000, Zoological Research, V21, P155

[7] SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler [J].

Luo, Ruibang ;

Liu, Binghang ;

Xie, Yinlong ;

Li, Zhenyu ;

Huang, Weihua ;

Yuan, Jianying ;

He, Guangzhu ;

Chen, Yanxiang ;

Pan, Qi ;

Liu, Yunjie ;

Tang, Jingbo ;

Wu, Gengxiong ;

Zhang, Hao ;

Shi, Yujian ;

Liu, Yong ;

Yu, Chang ;

Wang, Bo ;

Lu, Yao ;

Han, Changlei ;

Cheung, David W. ;

Yiu, Siu-Ming ;

Peng, Shaoliang ;

Zhu Xiaoqian ;

Liu, Guangming ;

Liao, Xiangke ;

Li, Yingrui ;

Yang, Huanming ;

Wang, Jian ;

Lam, Tak-Wah ;

Wang, Jun .

GIGASCIENCE, 2012, 1

[8] MODELTEST: testing the model of DNA substitution [J].

Posada, D ;

Crandall, KA .

BIOINFORMATICS, 1998, 14 (09) :817-818

[9] MrBayes 3: Bayesian phylogenetic inference under mixed models [J].

Ronquist, F ;

Huelsenbeck, JP .

BIOINFORMATICS, 2003, 19 (12) :1572-1574

[10]

Sambrook J., 1989, Molecular Cloning: A Laboratory Manual, V2, P14

← 1 2 →