Molecular Docking in Drug Discovery

被引:25
作者
Bhagat, Rani T. [1 ]
Butle, Santosh R. [2 ]
Khobragade, Deepak S. [1 ]
Wankhede, Sagar B. [1 ]
Prasad, Chandani C. [1 ]
Mahure, Divyani S. [1 ]
Armarkar, Ashwini, V [1 ]
机构
[1] Datta Meghe Inst Med Sci Deemed Be Univ, Datta Meghe Coll Pharm, Sawangi 442107, Wardha, India
[2] Swami Ramanand Teerth Marathwada Univ, Sch Pharm, Nanded 431606, India
关键词
Molecular docking; binding; receptor; rigid; flexible; PROTEIN-LIGAND INTERACTIONS; DE-NOVO DESIGN; FREE-ENERGY CALCULATIONS; SCORING FUNCTION; AUTOMATED DOCKING; FLEXIBLE LIGANDS; BINDING-AFFINITY; CONFORMATIONAL-CHANGES; GENETIC ALGORITHM; NUCLEIC-ACIDS;
D O I
10.9734/JPRI/2021/v33i30B31639
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
In last few years the Computer Aided Drug Design and Discovery is many success rates. In academics and many pharmaceutical industries for drug lead discovery they adopt the Computational Drug Design. The modern era of drug discovery and development structural information play an important role. For visualization of 3D-structure of molecule different docking program are developed. The docking score is analysed by using computer-based drug design software. It is structure based virtual screening method for the orientation, conformation, position into a structure of target molecule. Ligand and Protein docking is new concept. Molecular docking method complication is optimization of lead molecule, biological pathway evaluation and de Novo drug design.
引用
收藏
页码:46 / 58
页数:13
相关论文
共 103 条
[51]   Development and validation of a genetic algorithm for flexible docking [J].
Jones, G ;
Willett, P ;
Glen, RC ;
Leach, AR ;
Taylor, R .
JOURNAL OF MOLECULAR BIOLOGY, 1997, 267 (03) :727-748
[52]   The many roles of computation in drug discovery [J].
Jorgensen, WL .
SCIENCE, 2004, 303 (5665) :1813-1818
[53]   GRID/CPCA: A new computational tool to design selective ligands [J].
Kastenholz, MA ;
Pastor, M ;
Cruciani, G ;
Haaksma, EEJ ;
Fox, T .
JOURNAL OF MEDICINAL CHEMISTRY, 2000, 43 (16) :3033-3044
[54]   Docking and scoring in virtual screening for drug discovery: Methods and applications [J].
Kitchen, DB ;
Decornez, H ;
Furr, JR ;
Bajorath, J .
NATURE REVIEWS DRUG DISCOVERY, 2004, 3 (11) :935-949
[55]   FREE-ENERGY CALCULATIONS - APPLICATIONS TO CHEMICAL AND BIOCHEMICAL PHENOMENA [J].
KOLLMAN, P .
CHEMICAL REVIEWS, 1993, 93 (07) :2395-2417
[56]   Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models [J].
Kollman, PA ;
Massova, I ;
Reyes, C ;
Kuhn, B ;
Huo, SH ;
Chong, L ;
Lee, M ;
Lee, T ;
Duan, Y ;
Wang, W ;
Donini, O ;
Cieplak, P ;
Srinivasan, J ;
Case, DA ;
Cheatham, TE .
ACCOUNTS OF CHEMICAL RESEARCH, 2000, 33 (12) :889-897
[57]   Theoretical and practical considerations in virtual screening: A beaten field? [J].
Kontoyianni, Maria ;
Madhav, Prakash ;
Suchanek, Eric ;
Seibel, William .
CURRENT MEDICINAL CHEMISTRY, 2008, 15 (02) :107-116
[58]   CORRELATION OF STRUCTURE AND FUNCTION IN ENZYME ACTION [J].
KOSHLAND, DE .
SCIENCE, 1963, 142 (359) :1533-&
[59]   A GEOMETRIC APPROACH TO MACROMOLECULE-LIGAND INTERACTIONS [J].
KUNTZ, ID ;
BLANEY, JM ;
OATLEY, SJ ;
LANGRIDGE, R ;
FERRIN, TE .
JOURNAL OF MOLECULAR BIOLOGY, 1982, 161 (02) :269-288
[60]   Virtual screening: An effective tool for lead structure discovery? [J].
Langer, T ;
Hoffmann, RD .
CURRENT PHARMACEUTICAL DESIGN, 2001, 7 (07) :509-527