Complete genome sequence of Vibrio parahaemolyticus FORC_023 isolated from raw fish storage water

被引:6
作者
Chung, Han Young [1 ]
Na, Eun Jung [1 ]
Lee, Kyu-Ho [2 ]
Ryu, Sangryeol [1 ]
Yoon, Hyunjin [3 ]
Lee, Ju-Hoon [4 ]
Kim, Hyeun Bum [5 ]
Kim, Heebal [6 ]
Choi, Sang Ho [1 ]
Kim, Bong-Soo [7 ]
机构
[1] Seoul Natl Univ, Dept Agr Biotechnol, Ctr Food Safety & Toxicol, Seoul 08826, South Korea
[2] Sogang Univ, Dept Life Sci, 35 Baekbeom Ro, Seoul 121742, South Korea
[3] Ajou Univ, Dept Appl Chem & Biol Engn, Suwon 443749, South Korea
[4] Kyung Hee Univ, Dept Food Sci & Biotechnol, 1732 Deokyoungdae Ro, Yongin 17104, South Korea
[5] Dankook Univ, Dept Anim Resources Sci, 119 Dandae Ro, Cheonan 330714, South Korea
[6] Seoul Natl Univ, Dept Anim Sci & Biotechnol, Seoul 08826, South Korea
[7] Hallym Univ, Dept Life Sci, 1 Hallymdaehak Gil, Chunchon 200702, South Korea
来源
PATHOGENS AND DISEASE | 2016年 / 74卷 / 04期
关键词
Vibrio parahaemolyticus; genome sequence; food-borne pathogen; comparative analysis; virulence factor; V. parahaemolyticus island; BACTERIA; SERVER; CELLS; GENE;
D O I
10.1093/femspd/ftw032
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Vibrio parahaemolyticus is a Gram-negative halophilic bacterium that causes food-borne gastroenteritis in humans who consume V. parahaemolyticus-contaminated seafood. The FORC 023 strain was isolated from raw fish storage water, containing live fish at a sashimi restaurant. Here, we aimed to sequence and characterize the genome of the FORC 023 strain. The genome of the FORC 023 strain showed two circular chromosomes, which contained 4227 open reading frames (ORFs), 131 tRNA genes and 37 rRNA genes. Although the genome of FORC 023 did not include major virulence genes, such as genes encoding thermostable direct hemolysin (TDH) and TDH-related hemolysin (TRH), it contained genes encoding other hemolysins, secretion systems, iron uptake-related proteins and several V. parahaemolyticus islands. The highest average nucleotide identity value was obtained between the FORC 023 strain and UCM-V493 (CP007004-6). Comparative genomic analysis of FORC 023 with UCM-V493 revealed that FORC 023 carried an additional genomic region encoding virulence factors, such as repeats-in-toxin and type II secretion factors. Furthermore, in vitro cytotoxicity testing showed that FORC 023 exhibited a high level of cytotoxicity toward INT-407 human epithelial cells. These results suggested that the FORC 023 strain may be a food-borne pathogen.
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页数:5
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共 22 条
[1]   The dimer formed by the periplasmic domain of EpsL from the Type 2 Secretion System of Vibrio parahaemolyticus [J].
Abendroth, Jan ;
Kreger, Allison C. ;
Hol, Wim G. J. .
JOURNAL OF STRUCTURAL BIOLOGY, 2009, 168 (02) :313-322
[2]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[3]   TAXONOMY OF MARINE BACTERIA - GENUS BENECKEA [J].
BAUMANN, P ;
BAUMANN, L ;
MANDEL, M .
JOURNAL OF BACTERIOLOGY, 1971, 107 (01) :268-+
[4]   GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions [J].
Besemer, J ;
Lomsadze, A ;
Borodovsky, M .
NUCLEIC ACIDS RESEARCH, 2001, 29 (12) :2607-2618
[5]   Vibrio parahaemolyticus cell biology and pathogenicity determinants [J].
Broberg, Christopher A. ;
Calder, Thomas J. ;
Orth, Kim .
MICROBES AND INFECTION, 2011, 13 (12-13) :992-1001
[6]   Effect on Human Cells of Environmental Vibrio parahaemolyticus Strains Carrying Type III Secretion System 2 [J].
Caburlotto, Greta ;
Lleo, Maria M. ;
Hilton, Tamara ;
Huq, Anwar ;
Colwell, Rita R. ;
Kaper, James B. .
INFECTION AND IMMUNITY, 2010, 78 (07) :3280-3287
[7]   ACT: the Artemis comparison tool [J].
Carver, TJ ;
Rutherford, KM ;
Berriman, M ;
Rajandream, MA ;
Barrell, BG ;
Parkhill, J .
BIOINFORMATICS, 2005, 21 (16) :3422-3423
[8]   Secretion systems in Gram-negative bacteria: structural and mechanistic insights [J].
Costa, Tiago R. D. ;
Felisberto-Rodrigues, Catarina ;
Meir, Amit ;
Prevost, Marie S. ;
Redzej, Adam ;
Trokter, Martina ;
Waksman, Gabriel .
NATURE REVIEWS MICROBIOLOGY, 2015, 13 (06) :343-359
[9]   Seasonal variation in abundance of total and pathogenic Vibrio parahaemolyticus bacteria in oysters along the southwest coast of India [J].
Deepanjali, A ;
Kumar, HS ;
Karunasagar, I ;
Karunasagar, I .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (07) :3575-3580
[10]   Four genomic islands that mark post-1995 pandemic Vibrio parahaemolyticus isolates [J].
Hurley, Catherine C. ;
Quirke, AnneMarie ;
Reen, F. Jerry ;
Boyd, E. Fidelma .
BMC GENOMICS, 2006, 7 (1)