Characteristics of Antisense Transcript Promoters and the Regulation of Their Activity

被引:30
作者
Lin, Shudai [1 ,2 ,3 ]
Zhang, Li [1 ,2 ,3 ,4 ]
Luo, Wen [1 ,2 ,3 ]
Zhang, Xiquan [1 ,2 ,3 ]
机构
[1] South China Agr Univ, Coll Anim Sci, Dept Anim Genet Breeding & Reprod, Guangzhou 510642, Guangdong, Peoples R China
[2] Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Guangzhou 510642, Guangdong, Peoples R China
[3] Minist Agr, Key Lab Chicken Genet Breeding & Reprod, Guangzhou 510642, Guangdong, Peoples R China
[4] Guangdong Ocean Univ, Coll Agr, Zhanjiang 524088, Peoples R China
关键词
antisense promoter; location; characteristics; activity; influencing factors; HUMAN BIDIRECTIONAL PROMOTERS; LONG NONCODING RNA; GENOME-WIDE ANALYSIS; GENE-EXPRESSION; DNA METHYLATION; MESSENGER-RNA; HEPATOCELLULAR-CARCINOMA; L1; RETROTRANSPOSON; FACTOR-BINDING; HUMAN-CELLS;
D O I
10.3390/ijms17010009
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recently, an increasing number of studies on natural antisense transcripts have been reported, especially regarding their classification, temporal and spatial expression patterns, regulatory functions and mechanisms. It is well established that natural antisense transcripts are produced from the strand opposite to the strand encoding a protein. Despite the pivotal roles of natural antisense transcripts in regulating the expression of target genes, the transcriptional mechanisms initiated by antisense promoters (ASPs) remain unknown. To date, nearly all of the studies conducted on this topic have focused on the ASP of a single gene of interest, whereas no study has systematically analyzed the locations of ASPs in the genome, ASP activity, or factors influencing this activity. This review focuses on elaborating on and summarizing the characteristics of ASPs to extend our knowledge about the mechanisms of antisense transcript initiation.
引用
收藏
页数:17
相关论文
共 98 条
[1]   Progress in therapeutic antisense applications for neuromuscular disorders [J].
Aartsma-Rus, Annemieke ;
van Ommen, Gert-Jan B. .
EUROPEAN JOURNAL OF HUMAN GENETICS, 2010, 18 (02) :146-153
[2]   Abundance, arrangement, and function of sequence motifs in the chicken promoters [J].
Abe, Hideaki ;
Gemmell, Neil J. .
BMC GENOMICS, 2014, 15 :1-12
[3]   Promoter directionality is controlled by U1 snRNP and polyadenylation signals [J].
Almada, Albert E. ;
Wu, Xuebing ;
Kriz, Andrea J. ;
Burge, Christopher B. ;
Sharp, Phillip A. .
NATURE, 2013, 499 (7458) :360-U141
[4]   Construction of a reporter vector for analysis of bidirectional transcriptional activity of retrovirus LTR [J].
Arpin-Andre, Charlotte ;
Laverdure, Sylvain ;
Barbeau, Benoit ;
Gross, Antoine ;
Mesnard, Jean-Michel .
PLASMID, 2014, 74 :45-51
[5]   Long non-coding RNA-mediated mechanisms independent of the RNAi pathway in animals and plants [J].
Au, Phil Chi Khang ;
Zhu, Qian-Hao ;
Dennis, Elizabeth S. ;
Wang, Ming-Bo .
RNA BIOLOGY, 2011, 8 (03) :404-414
[6]   Janus-a comprehensive tool investigating the two faces of transcription [J].
Barann, Matthias ;
Esser, Daniela ;
Klostermeier, Ulrich C. ;
Lappalainen, Tuuli ;
Luzius, Anne ;
Kuiper, Jan W. P. ;
Ammerpohl, Ole ;
Vater, Inga ;
Siebert, Reiner ;
Amstislavskiy, Vyacheslav ;
Sudbrak, Ralf ;
Lehrach, Hans ;
Schreiber, Stefan ;
Rosenstiel, Philip .
BIOINFORMATICS, 2013, 29 (13) :1600-1606
[7]   Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells [J].
Batagov, Arsen O. ;
Yarmishyn, Aliaksandr A. ;
Jenjaroenpun, Piroon ;
Tan, Jovina Z. ;
Nishida, Yuichiro ;
Kurochkin, Igor V. .
BMC SYSTEMS BIOLOGY, 2013, 7 :S11
[8]   The Intronic Long Noncoding RNA ANRASSF1 Recruits PRC2 to the RASSF1A Promoter, Reducing the Expression of RASSF1A and Increasing Cell Proliferation [J].
Beckedorff, Felipe C. ;
Ayupe, Ana C. ;
Crocci-Souza, Renan ;
Amaral, Murilo S. ;
Nakaya, Helder I. ;
Soltys, Daniela T. ;
Menck, Carlos F. M. ;
Reis, Eduardo M. ;
Verjovski-Almeida, Sergio .
PLOS GENETICS, 2013, 9 (08)
[9]   Splicing of a non-coding antisense transcript controls LEF1 gene expression [J].
Beltran, Manuel ;
Aparicio-Prat, Estel ;
Mazzolini, Rocco ;
Millanes-Romero, Alba ;
Masso, Pere ;
Jenner, Richard G. ;
Diaz, Victor M. ;
Peiro, Sandra ;
Garcia de Herreros, Antonio .
NUCLEIC ACIDS RESEARCH, 2015, 43 (12) :5785-5797
[10]   Mutational analysis of the HIV-1 LTR as a promoter of negative sense transcription [J].
Bentley, K ;
Deacon, N ;
Sonza, S ;
Zeichner, S ;
Churchill, M .
ARCHIVES OF VIROLOGY, 2004, 149 (12) :2277-2294