Transporting Ocean Viromes: Invasion of the Aquatic Biosphere

被引:35
作者
Kim, Yiseul [1 ]
Aw, Tiong Gim [2 ]
Rose, Joan B. [1 ,2 ]
机构
[1] Michigan State Univ, Dept Microbiol & Mol Genet, E Lansing, MI 48824 USA
[2] Michigan State Univ, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA
基金
美国国家科学基金会;
关键词
VIRAL COMMUNITIES; BALLAST WATER; VIRUSES; PHYTOPLANKTON; DIVERSITY; SHIPS;
D O I
10.1371/journal.pone.0152671
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Studies of marine viromes (viral metagenomes) have revealed that DNA viruses are highly diverse and exhibit biogeographic patterns. However, little is known about the diversity of RNA viruses, which are mostly composed of eukaryotic viruses, and their biogeographic patterns in the oceans. A growth in global commerce and maritime traffic may accelerate spread of diverse and non-cosmopolitan DNA viruses and potentially RNA viruses from one part of the world to another. Here, we demonstrated through metagenomic analyses that failure to comply with mid-ocean ballast water exchange regulation could result in movement of viromes including both DNA viruses and RNA viruses (including potential viral pathogens) unique to geographic and environmental niches. Furthermore, our results showed that virus richness (known and unknown viruses) in ballast water is associated with distance between ballast water exchange location and its nearest shoreline as well as length of water storage time in ballast tanks (voyage duration). However, richness of only known viruses is governed by local environmental conditions and different viral groups have different responses to environmental variation. Overall, these results identified ballast water as a factor contributing to ocean virome transport and potentially increased exposure of the aquatic bioshpere to viral invasion.
引用
收藏
页数:18
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共 43 条
[31]   Marine viruses, a genetic reservoir revealed by targeted viromics [J].
Martinez, Joaquin Martinez ;
Swan, Brandon K. ;
Wilson, William H. .
ISME JOURNAL, 2014, 8 (05) :1079-1088
[32]   IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth [J].
Peng, Yu ;
Leung, Henry C. M. ;
Yiu, S. M. ;
Chin, Francis Y. L. .
BIOINFORMATICS, 2012, 28 (11) :1420-1428
[33]   Metavir 2: new tools for viral metagenome comparison and assembled virome analysis [J].
Roux, Simon ;
Tournayre, Jeremy ;
Mahul, Antoine ;
Debroas, Didier ;
Enault, Francois .
BMC BIOINFORMATICS, 2014, 15
[34]   Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics [J].
Roux, Simon ;
Enault, Francois ;
Robin, Agnes ;
Ravet, Viviane ;
Personnic, Sebastien ;
Theil, Sebastien ;
Colombet, Jonathan ;
Sime-Ngando, Telesphore ;
Debroas, Didier .
PLOS ONE, 2012, 7 (03)
[35]   Global spread of microorganisms by ships - Ballast water discharged from vessels harbours a cocktail of potential pathogens. [J].
Ruiz, GM ;
Rawlings, TK ;
Dobbs, FC ;
Drake, LA ;
Mullady, T ;
Huq, A ;
Colwell, RR .
NATURE, 2000, 408 (6808) :49-50
[36]   Novel Cyclovirus in Human Cerebrospinal Fluid, Malawi, 2010-2011 [J].
Smits, Saskia L. ;
Zijlstra, Ed E. ;
van Hellemond, Jaap J. ;
Schapendonk, Claudia M. E. ;
Bodewes, Rogier ;
Schurch, Anita C. ;
Haagmans, Bart L. ;
Osterhaus, Albert D. M. E. .
EMERGING INFECTIOUS DISEASES, 2013, 19 (09) :1511-1513
[37]   Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances [J].
Tseng, Ching-Hung ;
Chiang, Pei-Wen ;
Shiah, Fuh-Kwo ;
Chen, Yi-Lung ;
Liou, Jia-Rong ;
Hsu, Ting-Chang ;
Maheswararajah, Suhinthan ;
Saeed, Isaam ;
Halgamuge, Saman ;
Tang, Sen-Lin .
ISME JOURNAL, 2013, 7 (12) :2374-2386
[38]   Limited geographic distribution of the novel cyclovirus CyCV-VN [J].
Van Tan, Le ;
De Jong, Menno D. ;
Nguyen Van Kinh ;
Nguyen Vu Trung ;
Taylor, Walter ;
Wertheim, Heiman F. L. ;
Van der Ende, Arie ;
Van der Hoek, Lia ;
Canuti, Marta ;
Crusat, Martin ;
Sona, Soeng ;
Nguyen Hanh Uyen ;
Giri, Abhishek ;
Nguyen Thi Thuy Chinh BKrong ;
Ho Dang Trung Nghia ;
Farrar, Jeremy ;
Bryant, Juliet E. ;
Tran Tinh Hien ;
Nguyen Van Vinh Chau ;
Van Doorn, H. Rogier .
SCIENTIFIC REPORTS, 2014, 4
[39]   Emerging viral diseases of fish and shrimp [J].
Walker, Peter J. ;
Winton, James R. .
VETERINARY RESEARCH, 2010, 41 (06)
[40]   Microarray-based detection and genotyping of viral pathogens [J].
Wang, D ;
Coscoy, L ;
Zylberberg, M ;
Avila, PC ;
Boushey, HA ;
Ganem, D ;
DeRisi, JL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (24) :15687-15692