The Study on The Solution Structure of Full Length Primase From Bacillus subtilis

被引:0
|
作者
Luo Hao [1 ,2 ,3 ]
Liu Wen-Lin [1 ,2 ,3 ]
Zhou Ying-Qin [1 ,2 ]
Tao Mei [1 ,2 ,3 ]
Liu Zhong-Chuan [1 ,2 ]
Wang Gang-Gang [1 ,2 ]
机构
[1] Chinese Acad Sci, Chengdu Inst Biol, Key Lab Environm & Appl Microbiol, Chengdu 610041, Sichuan, Peoples R China
[2] Key Lab Environm Microbiol Sichuan Prov, Chengdu 610041, Sichuan, Peoples R China
[3] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
基金
中国国家自然科学基金;
关键词
DNA replication; primase; SAXS; flexibility; HELICASE-BINDING DOMAIN; SMALL-ANGLE SCATTERING; REPLICATION INITIATION; DNAG; STEAROTHERMOPHILUS; CRYSTAL;
D O I
10.16476/j.pibb.2019.0147
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In bacterial DNA replication, DnaG primase synthesizes RNA primers which are then extended by DNA polymerase. The DnaG primase consists of three domains, N-terminal zinc-binding domain (ZBD), RNA polymerase domain (RPD) and C-terminal helicase binding domain (HBD). In the process of producing primers, the three domains of primase cooperate with each other, and none is dispensable. Although the structures of the primase domains have been reported, so far, the full-length structure of the primase is not known yet. Here, the model of full-length DnaG in Bacillus subtilis (BsuDnaG) was constructed from the data of X-ray small angle scattering (SAXS) analysis. The BsuDnaG is in extended state in solution. On the other hand, the ZBD and HBD domains could exhibit continuous conformational changes relative to the RPD domain. This study suggests the domains rearrangement in DnaG primase may facilitate its function in DNA replication.
引用
收藏
页码:1101 / 1109
页数:9
相关论文
共 28 条
  • [1] Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase
    Bailey, Scott
    Eliason, William K.
    Steitz, Thomas A.
    [J]. SCIENCE, 2007, 318 (5849) : 459 - 463
  • [2] Insight into the Human DNA Primase Interaction with Template-Primer
    Baranovskiy, Andrey G.
    Zhang, Yinbo
    Suwa, Yoshiaki
    Gu, Jianyou
    Babayeva, Nigar D.
    Pavlov, Youri I.
    Tahirov, Tahir H.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2016, 291 (09) : 4793 - 4802
  • [3] Crystal Structure of the Human Primase
    Baranovskiy, Andrey G.
    Zhang, Yinbo
    Suwa, Yoshiaki
    Babayeva, Nigar D.
    Gu, Jianyou
    Pavlov, Youri I.
    Tahirov, Tahir H.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2015, 290 (09) : 5635 - 5646
  • [4] SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
    Biasini, Marco
    Bienert, Stefan
    Waterhouse, Andrew
    Arnold, Konstantin
    Studer, Gabriel
    Schmidt, Tobias
    Kiefer, Florian
    Cassarino, Tiziano Gallo
    Bertoni, Martino
    Bordoli, Lorenza
    Schwede, Torsten
    [J]. NUCLEIC ACIDS RESEARCH, 2014, 42 (W1) : W252 - W258
  • [5] Domain swapping reveals that the C- and N-terminal domains of DnaG and DnaB, respectively, are functional homologues
    Chintakayala, Kiran
    Larson, Marilynn A.
    Grainger, William H.
    Scott, David J.
    Griep, Mark A.
    Hinrichs, Steven H.
    Soultanas, Panos
    [J]. MOLECULAR MICROBIOLOGY, 2007, 63 (06) : 1629 - 1639
  • [6] Chodavarapu S, 2016, ENZYMES, V39, P1, DOI 10.1016/bs.enz.2016.03.001
  • [7] Identification of a DNA primase template tracking site redefines the geometry of primer synthesis
    Corn, Jacob E.
    Pelton, Jeffrey G.
    Berger, James M.
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2008, 15 (02) : 163 - 169
  • [8] Crosstalk between primase subunits can act to regulate primer synthesis in trans
    Corn, JE
    Pease, PJ
    Hura, GL
    Berger, JM
    [J]. MOLECULAR CELL, 2005, 20 (03) : 391 - 401
  • [9] ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions
    Franke, D.
    Petoukhov, M. V.
    Konarev, P. V.
    Panjkovich, A.
    Tuukkanen, A.
    Mertens, H. D. T.
    Kikhney, A. G.
    Hajizadeh, N. R.
    Franklin, J. M.
    Jeffries, C. M.
    Svergun, D. I.
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2017, 50 : 1212 - 1225
  • [10] DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering
    Franke, Daniel
    Svergun, Dmitri I.
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2009, 42 : 342 - 346