Fluorescent Structural DNA Nanoballs Functionalized with Phosphate-Linked Nucleotide Triphosphates

被引:7
作者
Anderson, Jon P. [1 ]
Reynolds, Bambi L. [1 ]
Baum, Kristin [2 ]
Williams, John G. [1 ]
机构
[1] LI COR Biosci Inc, Lincoln, NE 68504 USA
[2] Iowa Dept Publ Safety, Criminalist Lab, Ankeny, IA 50023 USA
关键词
Single molecule sequencing; phosphate-labeled nucleotide; DNA nanoball; SYBR; fluorescent; ARRAYS;
D O I
10.1021/nl9039718
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Highly labeled DNA nanoballs functionalized with phosphate-linked nucleotide triphosphates (dNTPs) were developed as a source of dNTPs for DNA polymerase The particles were prepared by strand-displacement polymerization from a self-complementary circular template. Imaged by atomic force microscopy, these functionalized particles appear as condensed fuzzy balls with diameters between 50 and 150 nm. They emit a bright fluorescent signal, detected in 2 MS exposures with a signal-to-noise ratio of 25 when imaged using a TIR fluorescence microscope.
引用
收藏
页码:788 / 792
页数:5
相关论文
共 15 条
[1]   Fluorescent DNA nanotags: Supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates [J].
Benvin, Andrea L. ;
Creeger, Yehuda ;
Fisher, Gregory W. ;
Ballou, Byron ;
Waggoner, Alan S. ;
Armitage, Bruce A. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (07) :2025-2034
[2]   Enzymatic fabrication of DNA nanostructures: Extension of a self-assembled oligonucleotide monolayer on gold arrays [J].
Chow, DC ;
Lee, WK ;
Zauscher, S ;
Chilkoti, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (41) :14122-14123
[3]   Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [J].
Drmanac, Radoje ;
Sparks, Andrew B. ;
Callow, Matthew J. ;
Halpern, Aaron L. ;
Burns, Norman L. ;
Kermani, Bahram G. ;
Carnevali, Paolo ;
Nazarenko, Igor ;
Nilsen, Geoffrey B. ;
Yeung, George ;
Dahl, Fredrik ;
Fernandez, Andres ;
Staker, Bryan ;
Pant, Krishna P. ;
Baccash, Jonathan ;
Borcherding, Adam P. ;
Brownley, Anushka ;
Cedeno, Ryan ;
Chen, Linsu ;
Chernikoff, Dan ;
Cheung, Alex ;
Chirita, Razvan ;
Curson, Benjamin ;
Ebert, Jessica C. ;
Hacker, Coleen R. ;
Hartlage, Robert ;
Hauser, Brian ;
Huang, Steve ;
Jiang, Yuan ;
Karpinchyk, Vitali ;
Koenig, Mark ;
Kong, Calvin ;
Landers, Tom ;
Le, Catherine ;
Liu, Jia ;
McBride, Celeste E. ;
Morenzoni, Matt ;
Morey, Robert E. ;
Mutch, Karl ;
Perazich, Helena ;
Perry, Kimberly ;
Peters, Brock A. ;
Peterson, Joe ;
Pethiyagoda, Charit L. ;
Pothuraju, Kaliprasad ;
Richter, Claudia ;
Rosenbaum, Abraham M. ;
Roy, Shaunak ;
Shafto, Jay ;
Sharanhovich, Uladzislau .
SCIENCE, 2010, 327 (5961) :78-81
[4]   Real-Time DNA Sequencing from Single Polymerase Molecules [J].
Eid, John ;
Fehr, Adrian ;
Gray, Jeremy ;
Luong, Khai ;
Lyle, John ;
Otto, Geoff ;
Peluso, Paul ;
Rank, David ;
Baybayan, Primo ;
Bettman, Brad ;
Bibillo, Arkadiusz ;
Bjornson, Keith ;
Chaudhuri, Bidhan ;
Christians, Frederick ;
Cicero, Ronald ;
Clark, Sonya ;
Dalal, Ravindra ;
deWinter, Alex ;
Dixon, John ;
Foquet, Mathieu ;
Gaertner, Alfred ;
Hardenbol, Paul ;
Heiner, Cheryl ;
Hester, Kevin ;
Holden, David ;
Kearns, Gregory ;
Kong, Xiangxu ;
Kuse, Ronald ;
Lacroix, Yves ;
Lin, Steven ;
Lundquist, Paul ;
Ma, Congcong ;
Marks, Patrick ;
Maxham, Mark ;
Murphy, Devon ;
Park, Insil ;
Pham, Thang ;
Phillips, Michael ;
Roy, Joy ;
Sebra, Robert ;
Shen, Gene ;
Sorenson, Jon ;
Tomaney, Austin ;
Travers, Kevin ;
Trulson, Mark ;
Vieceli, John ;
Wegener, Jeffrey ;
Wu, Dawn ;
Yang, Alicia ;
Zaccarin, Denis .
SCIENCE, 2009, 323 (5910) :133-138
[5]   ROLLING REPLICATION OF SHORT DNA CIRCLES [J].
FIRE, A ;
XU, SQ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (10) :4641-4645
[6]   Towards a $1000 human genome [J].
Huang, X. ;
Barbee, K. ;
Chen, Y-J ;
Roller, E. .
NANOMEDICINE-NANOTECHNOLOGY BIOLOGY AND MEDICINE, 2006, 2 (04) :271-272
[7]   Synthesis and stability of novel terminal phosphate-labeled nucleotides [J].
Reynolds, Bambi ;
Miller, Rachel ;
Williams, John G. ;
Anderson, Jon P. .
NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS, 2008, 27 (01) :18-30
[8]   How to get genomes at one ten-thousandth the cost [J].
Schloss, Jeffery A. .
NATURE BIOTECHNOLOGY, 2008, 26 (10) :1113-1115
[9]   Gene sequencing - The race for the $1000 Genome [J].
Service, RF .
SCIENCE, 2006, 311 (5767) :1544-1546
[10]  
Shendure Jay A, 2008, Curr Protoc Mol Biol, VChapter 7, DOI 10.1002/0471142727.mb0701s81