Plant metabolomics: large-scale phytochemistry in the functional genomics era

被引:742
作者
Sumner, LW
Mendes, P
Dixon, RA
机构
[1] Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA
[2] Virginia Polytech Inst & State Univ, Virginia Bioinformat Inst, Blacksburg, VA 24061 USA
关键词
metabolomics; metabolic profiling; metabolite profiling; analytical instrumentation; mass spectrometry; MS; bioinformatics; metabolite; databases; Medicago truncatula;
D O I
10.1016/S0031-9422(02)00708-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Metabolomics or the large-scale phytochemical analysis of plants is reviewed in relation to functional genomics and systems biology. A historical account of the introduction and evolution of metabolite profiling into today's modern comprehensive metabolomics approach is provided. Many of the technologies used in metabolomics, including optical spectroscopy, nuclear magnetic resonance, and mass spectrometry are surveyed. The critical role of bioinformatics and various methods of data visualization are summarized and the future role of metabolomics in plant science assessed. (C) 2003 Elsevier Science Ltd. All rights reserved.
引用
收藏
页码:817 / 836
页数:20
相关论文
共 158 条
  • [1] Aharoni Asaph, 2002, OMICS A Journal of Integrative Biology, V6, P217, DOI 10.1089/15362310260256882
  • [2] [Anonymous], 1975, Discriminant Analysis
  • [3] [Anonymous], ADV BIOCH ENG BIOTEC
  • [4] Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    Kaul, S
    Koo, HL
    Jenkins, J
    Rizzo, M
    Rooney, T
    Tallon, LJ
    Feldblyum, T
    Nierman, W
    Benito, MI
    Lin, XY
    Town, CD
    Venter, JC
    Fraser, CM
    Tabata, S
    Nakamura, Y
    Kaneko, T
    Sato, S
    Asamizu, E
    Kato, T
    Kotani, H
    Sasamoto, S
    Ecker, JR
    Theologis, A
    Federspiel, NA
    Palm, CJ
    Osborne, BI
    Shinn, P
    Conway, AB
    Vysotskaia, VS
    Dewar, K
    Conn, L
    Lenz, CA
    Kim, CJ
    Hansen, NF
    Liu, SX
    Buehler, E
    Altafi, H
    Sakano, H
    Dunn, P
    Lam, B
    Pham, PK
    Chao, Q
    Nguyen, M
    Yu, GX
    Chen, HM
    Southwick, A
    Lee, JM
    Miranda, M
    Toriumi, MJ
    Davis, RW
    [J]. NATURE, 2000, 408 (6814) : 796 - 815
  • [5] Amino acid analysis in five pooled single plant cell samples using capillary electrophoresis coupled to laser-induced fluorescence detection
    Arlt, K
    Brandt, S
    Kehr, J
    [J]. JOURNAL OF CHROMATOGRAPHY A, 2001, 926 (02) : 319 - 325
  • [6] THE GRAND TOUR - A TOOL FOR VIEWING MULTIDIMENSIONAL DATA
    ASIMOV, D
    [J]. SIAM JOURNAL ON SCIENTIFIC AND STATISTICAL COMPUTING, 1985, 6 (01): : 128 - 143
  • [7] Baggett BR, 2002, ELECTROPHORESIS, V23, P1642, DOI 10.1002/1522-2683(200206)23:11<1642::AID-ELPS1642>3.0.CO
  • [8] 2-Y
  • [9] Bailey NJC, 2000, RAPID COMMUN MASS SP, V14, P679, DOI 10.1002/(SICI)1097-0231(20000430)14:8<679::AID-RCM936>3.0.CO
  • [10] 2-V