Review Alternative Polyadenylation in Stem Cell Self-Renewal and Differentiation

被引:23
作者
Sommerkamp, Pia [1 ,2 ,3 ]
Cabezas-Wallscheid, Nina [4 ]
Trumpp, Andreas [1 ,2 ,3 ,5 ,6 ]
机构
[1] German Canc Res Ctr, Div Stem Cells & Canc, D-69120 Heidelberg, Germany
[2] DKFZ ZMBH Alliance, D-69120 Heidelberg, Germany
[3] Heidelberg Inst Stem Cell Technol & Expt Med HI S, D-69120 Heidelberg, Germany
[4] Max Planck Inst Immunobiol & Epigenet, D-79108 Freiburg, Germany
[5] Heidelberg Univ, Fac Biosci, D-69117 Heidelberg, Germany
[6] German Canc Consortium DKTK, D-69120 Heidelberg, Germany
基金
欧洲研究理事会;
关键词
PRE-MESSENGER-RNA; CLEAVAGE FACTOR-I; 3' UNTRANSLATED REGIONS; REGENERATIVE MEDICINE; 3'-END CLEAVAGE; GENE-EXPRESSION; C-MYC; PROTEIN; SIGNAL; MECHANISMS;
D O I
10.1016/j.molmed.2021.04.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cellular function is shaped by transcriptional and post-transcriptional mechanisms, including alternative polyadenylation (APA). By directly controlling 3 '- untranslated region (UTR) length and the selection of the last exon, APA regulates up to 70% of all cellular transcripts influencing RNA stability, output, and protein isoform expression. Cell-state-dependent 3 '-UTR shortening has been identified as a hallmark of cellular proliferation. Hence, quiescent/dormant stem cells are characterized by long 3 '-UTRs, whereas proliferative stem/progenitor cells exhibit 3 '-UTR shortening. Here, the latest studies analyzing the role of APA in regulating stem cell state, self-renewal, differentiation, and metabolism are reviewed. The new role of APA in controlling stem cell fate opens novel potential therapeutic avenues in the field of regenerative medicine.
引用
收藏
页码:660 / 672
页数:13
相关论文
共 123 条
  • [1] Distinct role of long 3′ UTR BDNF mRNA in spine morphology and synaptic plasticity in hippocampal neurons
    An, Juan Ji
    Gharami, Kusumika
    Liao, Guey-Ying
    Woo, Newton H.
    Lau, Anthony G.
    Vanevski, Filip
    Torre, Enrique R.
    Jones, Kevin R.
    Feng, Yue
    Lu, Bai
    Xu, Baoji
    [J]. CELL, 2008, 134 (01) : 175 - 187
  • [2] To localize or not to localize: mRNA fate is in 3′UTR ends
    Andreassi, Catia
    Riccio, Antonella
    [J]. TRENDS IN CELL BIOLOGY, 2009, 19 (09) : 465 - 474
  • [3] Decoding Transcriptome Dynamics of Genome-Encoded Polyadenylation and Autoregulation with Small-Molecule Modulators of Alternative Polyadenylation
    Araki, Shinsuke
    Nakayama, Yusuke
    Sano, Osamu
    Nakao, Shoichi
    Shimizu-Ogasawara, Mari
    Toyoshiba, Hiroyoshi
    Nakanishi, Atsushi
    Aparicio, Samuel
    [J]. CELL CHEMICAL BIOLOGY, 2018, 25 (12): : 1470 - +
  • [4] UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3′ UTR Transcripts
    Bao, Jianqiang
    Vitting-Seerup, Kristoffer
    Waage, Johannes
    Tang, Chong
    Ge, Ying
    Porse, Bo T.
    Yan, Wei
    [J]. PLOS GENETICS, 2016, 12 (05):
  • [5] Patterns of variant polyadenylation signal usage in human genes
    Beaudoing, E
    Freier, S
    Wyatt, JR
    Claverie, JM
    Gautheret, D
    [J]. GENOME RESEARCH, 2000, 10 (07) : 1001 - 1010
  • [6] Alternative 3′ UTRs act as scaffolds to regulate membrane protein localization
    Berkovits, Binyamin D.
    Mayr, Christine
    [J]. NATURE, 2015, 522 (7556) : 363 - +
  • [7] In vitro biomimetic engineering of a human hematopoietic niche with functional properties
    Bourgine, Paul E.
    Klein, Thibaut
    Paczulla, Anna M.
    Shimizu, Takafumi
    Kunz, Leo
    Kokkaliaris, Konstantinos D.
    Coutu, Daniel L.
    Lengerke, Claudia
    Skoda, Radek
    Schroeder, Timm
    Martin, Ivan
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (25) : E5688 - E5695
  • [8] Alternative Polyadenylation Mediates MicroRNA Regulation of Muscle Stem Cell Function
    Boutet, Stephane C.
    Cheung, Tom H.
    Quach, Navaline L.
    Liu, Ling
    Prescott, Sara L.
    Edalati, Abdolhossein
    Iori, Kevin
    Rando, Thomas A.
    [J]. CELL STEM CELL, 2012, 10 (03) : 327 - 336
  • [9] Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling
    Brumbaugh, Justin
    Di Stefano, Bruno
    Wang, Xiuye
    Borkent, Marti
    Forouzmand, Elmira
    Clowers, Katie J.
    Ji, Fei
    Schwarz, Benjamin A.
    Kalocsay, Marian
    Elledge, Stephen J.
    Chen, Yue
    Sadreyev, Ruslan I.
    Gygi, Steven P.
    Hu, Guang
    Shi, Yongsheng
    Hochedlinger, Konrad
    [J]. CELL, 2018, 172 (1-2) : 106 - +
  • [10] Vitamin A-Retinoic Acid Signaling Regulates Hematopoietic Stem Cell Dormancy
    Cabezas-Wallscheid, Nina
    Buettner, Florian
    Sommerkamp, Pia
    Klimmeck, Daniel
    Ladel, Luisa
    Thalheimer, Frederic B.
    Pastor-Flores, Daniel
    Roma, Leticia P.
    Renders, Simon
    Zeisberger, Petra
    Przybylla, Adriana
    Schoenberger, Katharina
    Scognamiglio, Roberta
    Altamura, Sandro
    Florian, Carolina M.
    Fawaz, Malak
    Vonficht, Dominik
    Tesio, Melania
    Collier, Paul
    Pavlinic, Dinko
    Geiger, Hartmut
    Schroeder, Timm
    Benes, Vladimir
    Dick, Tobias P.
    Rieger, Michael A.
    Stegle, Oliver
    Trumpp, Andreas
    [J]. CELL, 2017, 169 (05) : 807 - +