RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms

被引:317
作者
Fay, Marta M. [1 ,2 ]
Lyons, Shawn M. [1 ,2 ]
Ivanov, Pavel [1 ,2 ,3 ]
机构
[1] Brigham & Womens Hosp, Div Rheumatol Immunol & Allergy, Boston, MA 02115 USA
[2] Harvard Med Sch, Dept Med, Boston, MA 02115 USA
[3] Broad Inst Harvard & MIT, Cambridge, MA 02142 USA
基金
美国国家卫生研究院;
关键词
RNA; G-quadruplex; RNA structure; RNA regulation; HYBRID G-QUADRUPLEX; SELECTIVE 2'-HYDROXYL ACYLATION; SINGLE NUCLEOTIDE RESOLUTION; PRIMER EXTENSION SHAPE; HUMAN TELOMERIC RNA; G-QUARTET STRUCTURE; G-RICH SEQUENCES; IN-CELL NMR; MESSENGER-RNA; TRANSLATION INITIATION;
D O I
10.1016/j.jmb.2017.05.017
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
G-quadruplexes (G4s) are extremely stable DNA or RNA secondary structures formed by sequences rich in guanine. These structures are implicated in many essential cellular processes, and the number of biological functions attributed to them continues to grow. While DNA G4s are well understood on structural and, to some extent, functional levels, RNA G4s and their functions have received less attention. The presence of bona fide RNA G4s in cells has long been a matter of debate. The development of G4-specific antibodies and ligands hinted on their presence in vivo, but recent advances in RNA sequencing coupled with chemical footprinting suggested the opposite. In this review, we will critically discuss the biology of RNA G4s focusing on the molecular mechanisms underlying their proposed functions. (C) 2017 Elsevier Ltd. All rights reserved.
引用
收藏
页码:2127 / 2147
页数:21
相关论文
共 175 条
[1]   NMR spectroscopy of G-quadruplexes [J].
Adrian, Michael ;
Heddi, Brahim ;
Anh Tuan Phan .
METHODS, 2012, 57 (01) :11-24
[2]   Human Telomeric RNA G-Quadruplex Response to Point Mutation in the G-Quartets [J].
Agarwala, Prachi ;
Kumar, Santosh ;
Pandey, Satyaprakash ;
Maiti, Souvik .
JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (13) :4617-4627
[3]   Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction [J].
Anh Tuan Phan ;
Kuryavyi, Vitaly ;
Darnell, Jennifer C. ;
Serganov, Alexander ;
Majumdar, Ananya ;
Ilin, Serge ;
Raslin, Tanya ;
Polonskaia, Anna ;
Chen, Cynthia ;
Clain, David ;
Darnell, Robert B. ;
Patel, Dinshaw J. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2011, 18 (07) :796-U73
[4]   A Potassium Ion-Dependent RNA Structural Switch Regulates Human Pre-miRNA 92b Maturation [J].
Arachchilage, Gayan Mirihana ;
Dassanayake, Arosha C. ;
Basu, Soumitra .
CHEMISTRY & BIOLOGY, 2015, 22 (02) :262-272
[5]   An RNA G-quadruplex in the 3′ UTR of the proto-oncogene PIM1 represses translation [J].
Arora, Amit ;
Suess, Beatrix .
RNA BIOLOGY, 2011, 8 (05) :802-805
[6]   Differential Biophysical Behavior of Human Telomeric RNA and DNA Quadruplex [J].
Arora, Amit ;
Maiti, Souvik .
JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (30) :10515-10520
[7]   Unconventional Translation of C9ORF72 GGGGCC Expansion Generates Insoluble Polypeptides Specific to c9FTD/ALS [J].
Ash, Peter E. A. ;
Bieniek, Kevin F. ;
Gendron, Tania F. ;
Caulfield, Thomas ;
Lin, Wen-Lang ;
DeJesus-Hernandez, Mariely ;
van Blitterswijk, Marka M. ;
Jansen-West, Karen ;
Paul, Joseph W., III ;
Rademakers, Rosa ;
Boylan, Kevin B. ;
Dickson, Dennis W. ;
Petrucelli, Leonard .
NEURON, 2013, 77 (04) :639-646
[8]   Control of mammalian translation by mRNA structure near caps [J].
Babendure, JR ;
Babendure, JL ;
Ding, JH ;
Tsien, RY .
RNA, 2006, 12 (05) :851-861
[9]   THE G-RICH AUXILIARY DOWNSTREAM ELEMENT HAS DISTINCT SEQUENCE AND POSITION REQUIREMENTS AND MEDIATES EFFICIENT 3' END PRE-MESSENGER-RNA PROCESSING THROUGH A TRANS-ACTING FACTOR [J].
BAGGA, PS ;
FORD, LP ;
CHEN, F ;
WILUSZ, J .
NUCLEIC ACIDS RESEARCH, 1995, 23 (09) :1625-1631
[10]  
Bang I, 1910, BIOCHEM Z, V26, P293